8GAT

Structure of human NDS.1 Fab and 1G01 Fab in complex with influenza virus neuraminidase from A/Indiana/10/2011 (H3N2v), based on consensus cryo-EM map with only Fab 1G01 resolved


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Protective human monoclonal antibodies target conserved sites of vulnerability on the underside of influenza virus neuraminidase.

Lederhofer, J.Tsybovsky, Y.Nguyen, L.Raab, J.E.Creanga, A.Stephens, T.Gillespie, R.A.Syeda, H.Z.Fisher, B.E.Skertic, M.Yap, C.Schaub, A.J.Rawi, R.Kwong, P.D.Graham, B.S.McDermott, A.B.Andrews, S.F.King, N.P.Kanekiyo, M.

(2024) Immunity 57: 574-586.e7

  • DOI: https://doi.org/10.1016/j.immuni.2024.02.003
  • Primary Citation of Related Structures:  
    8GAT, 8GAU, 8GAV

  • PubMed Abstract: 

    Continuously evolving influenza viruses cause seasonal epidemics and pose global pandemic threats. Although viral neuraminidase (NA) is an effective drug and vaccine target, our understanding of the NA antigenic landscape still remains incomplete. Here, we describe NA-specific human antibodies that target the underside of the NA globular head domain, inhibit viral propagation of a wide range of human H3N2, swine-origin variant H3N2, and H2N2 viruses, and confer both pre- and post-exposure protection against lethal H3N2 infection in mice. Cryo-EM structures of two such antibodies in complex with NA reveal non-overlapping epitopes covering the underside of the NA head. These sites are highly conserved among N2 NAs yet inaccessible unless the NA head tilts or dissociates. Our findings help guide the development of effective countermeasures against ever-changing influenza viruses by identifying hidden conserved sites of vulnerability on the NA underside.


  • Organizational Affiliation

    Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Vasodilator-stimulated phosphoprotein, Neuraminidase chimera466Homo sapiensInfluenza A virus (A/Indiana/10/2011(H3N2))
This entity is chimeric
Mutation(s): 0 
Gene Names: VASPNAL998_47825gpNA
EC: 3.2.1.18
UniProt & NIH Common Fund Data Resources
Find proteins for G9LQ08 (Influenza A virus)
Explore G9LQ08 
Go to UniProtKB:  G9LQ08
Find proteins for P50552 (Homo sapiens)
Explore P50552 
Go to UniProtKB:  P50552
PHAROS:  P50552
GTEx:  ENSG00000125753 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP50552G9LQ08
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Fab 1G01, heavy chainB [auth M]240Homo sapiensMutation(s): 0 
Entity Groups  
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Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Fab 1G01, light chainC [auth N]216Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-28
    Type: Initial release
  • Version 1.1: 2024-03-13
    Changes: Database references
  • Version 1.2: 2024-03-27
    Changes: Database references
  • Version 1.3: 2024-04-24
    Changes: Refinement description