8FZC

HIV-2 Gag Capsid from Immature Virus-like Particles

  • Classification: VIRUS LIKE PARTICLE
  • Organism(s): Human immunodeficiency virus type 2 (ISOLATE ROD)
  • Expression System: Homo sapiens
  • Mutation(s): No 

  • Deposited: 2023-01-28 Released: 2023-06-07 
  • Deposition Author(s): Talledge, N., Zhang, W., Mansky, L.M.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Science Foundation (NSF, United States), National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA), National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

HIV-2 Immature Particle Morphology Provides Insights into Gag Lattice Stability and Virus Maturation.

Talledge, N.Yang, H.Shi, K.Coray, R.Yu, G.Arndt, W.G.Meng, S.Baxter, G.C.Mendonca, L.M.Castano-Diez, D.Aihara, H.Mansky, L.M.Zhang, W.

(2023) J Mol Biol 435: 168143-168143

  • DOI: https://doi.org/10.1016/j.jmb.2023.168143
  • Primary Citation of Related Structures:  
    7TV2, 8FZC

  • PubMed Abstract: 

    Retrovirus immature particle morphology consists of a membrane enclosed, pleomorphic, spherical and incomplete lattice of Gag hexamers. Previously, we demonstrated that human immunodeficiency virus type 2 (HIV-2) immature particles possess a distinct and extensive Gag lattice morphology. To better understand the nature of the continuously curved hexagonal Gag lattice, we have used the single particle cryo-electron microscopy method to determine the HIV-2 Gag lattice structure for immature virions. The reconstruction map at 5.5 Å resolution revealed a stable, wineglass-shaped Gag hexamer structure with structural features consistent with other lentiviral immature Gag lattice structures. Cryo-electron tomography provided evidence for nearly complete ordered Gag lattice structures in HIV-2 immature particles. We also solved a 1.98 Å resolution crystal structure of the carboxyl-terminal domain (CTD) of the HIV-2 capsid (CA) protein that identified a structured helix 12 supported via an interaction of helix 10 in the absence of the SP1 region of Gag. Residues at the helix 10-12 interface proved critical in maintaining HIV-2 particle release and infectivity. Taken together, our findings provide the first 3D organization of HIV-2 immature Gag lattice and important insights into both HIV Gag lattice stabilization and virus maturation.


  • Organizational Affiliation

    Institute for Molecular Virology, University of Minnesota - Twin Cities, Minneapolis, MN 55455, USA; Department of Diagnostic and Biological Sciences, School of Dentistry, University of Minnesota - Twin Cities, Minneapolis, MN 55455, USA; Masonic Cancer Center, University of Minnesota - Twin Cities, Minneapolis, MN 55455, USA. Electronic address: https://twitter.com/BioChemTalledge.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Spacer peptide 2
A, B, C
224Human immunodeficiency virus type 2 (ISOLATE ROD)Mutation(s): 0 
Gene Names: gag
UniProt
Find proteins for P04590 (Human immunodeficiency virus type 2 subtype A (isolate ROD))
Explore P04590 
Go to UniProtKB:  P04590
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04590
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States124279
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States118047
National Science Foundation (NSF, United States)United StatesDMR-2011401
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States124165
National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA)United States007097
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States150351
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States83196

Revision History  (Full details and data files)

  • Version 1.0: 2023-06-07
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Database references