8FN5

Structure of the truncated catalytic domain of Streptococcus mutans GtfD

PDB DOI: https://doi.org/10.2210/pdb8FN5/pdb

Classification: TRANSFERASE
Organism(s): Streptococcus mutans
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-12-27 Released: 2023-05-17
Deposition Author(s): Schormann, N., Deivanayagam, C.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.92 Å
R-Value Free: 0.251
R-Value Work: 0.226
R-Value Observed: 0.227

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

The catalytic domains of Streptococcus mutans glucosyltransferases: a structural analysis

Schormann, N., Patel, M., Thannickal, L., Purushotham, S., Wu, R., Mieher, J.L., Wu, H., Deivanayagam, C.

(2023) Acta Crystallogr F Struct Biol Commun 79: 119-127

DOI: https://doi.org/10.1107/S2053230X23003199

Macromolecule Content

Total Structure Weight: 141.21 kDa
Atom Count: 9,769
Modelled Residue Count: 1,190
Deposited Residue Count: 1,264
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glucosyltransferase-S	A, B	632	Streptococcus mutans	Mutation(s): 0 Gene Names: gtfD, SMU_910 EC: 2.4.1.5
UniProt
Find proteins for P49331 (Streptococcus mutans serotype c (strain ATCC 700610 / UA159)) Explore P49331 Go to UniProtKB: P49331
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P49331
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.92 Å
R-Value Free: 0.251
R-Value Work: 0.226
R-Value Observed: 0.227
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.625	α = 90
b = 126.765	β = 90
c = 173.356	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
Aimless	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-05-17

Deposition Author(s):

Deivanayagam, C.

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2023-05-17
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.