8EZ7

Structure of 1F04 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Leveraging vaccination-induced protective antibodies to define conserved epitopes on influenza N2 neuraminidase.

Lei, R.Kim, W.Lv, H.Mou, Z.Scherm, M.J.Schmitz, A.J.Turner, J.S.Tan, T.J.C.Wang, Y.Ouyang, W.O.Liang, W.Rivera-Cardona, J.Teo, C.Graham, C.S.Brooke, C.B.Presti, R.M.Mok, C.K.P.Krammer, F.Dai, X.Ellebedy, A.H.Wu, N.C.

(2023) Immunity 56: 2621

  • DOI: https://doi.org/10.1016/j.immuni.2023.10.005
  • Primary Citation of Related Structures:  
    8EZ3, 8EZ7, 8EZ8

  • PubMed Abstract: 

    There is growing appreciation for neuraminidase (NA) as an influenza vaccine target; however, its antigenicity remains poorly characterized. In this study, we isolated three broadly reactive N2 antibodies from the plasmablasts of a single vaccinee, including one that cross-reacts with NAs from seasonal H3N2 strains spanning five decades. Although these three antibodies have diverse germline usages, they recognize similar epitopes that are distant from the NA active site and instead involve the highly conserved underside of NA head domain. We also showed that all three antibodies confer prophylactic and therapeutic protection in vivo, due to both Fc effector functions and NA inhibition through steric hindrance. Additionally, the contribution of Fc effector functions to protection in vivo inversely correlates with viral growth inhibition activity in vitro. Overall, our findings advance the understanding of NA antibody response and provide important insights into the development of a broadly protective influenza vaccine.


  • Organizational Affiliation

    Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Heavy chain of influenza virus neuraminidase antibody 1F04A [auth H]126Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Light chain of influenza virus neuraminidase antibody 1F04B [auth L]110Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
NeuraminidaseC [auth A]388Influenza A virus (A/Moscow/10/1999(H3N2))Mutation(s): 0 
EC: 3.2.1.18
UniProt
Find proteins for Q8AZ87 (Influenza A virus)
Explore Q8AZ87 
Go to UniProtKB:  Q8AZ87
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UniProt GroupQ8AZ87
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  • Reference Sequence
Oligosaccharides

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Entity ID: 4
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseD [auth B]5N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42227JK
GlyCosmos:  G42227JK
GlyGen:  G42227JK
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentR01 AI167910
Other governmentDP2 AT011966
Other privateMichelson Prizes for Human Immunology and Vaccine Research
Other privateSearle Scholars Program

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-08
    Type: Initial release
  • Version 1.1: 2023-11-22
    Changes: Database references
  • Version 1.2: 2024-05-01
    Changes: Database references