8ENA

Thaumatin native-SAD structure determined at 5 keV with a helium environmet

PDB DOI: https://doi.org/10.2210/pdb8ENA/pdb

Classification: PLANT PROTEIN
Organism(s): Thaumatococcus daniellii
Expression System: Thaumatococcus daniellii
Mutation(s): No

Deposited: 2022-09-29 Released: 2022-11-02
Deposition Author(s): Karasawa, A., Andi, B., Ruchs, M.R., Shi, W., McSweeney, S., Hendrickson, W.A., Liu, Q.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.234
R-Value Work: 0.185
R-Value Observed: 0.188

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Multi-crystal native-SAD phasing at 5 keV with a helium environment

Karasawa, A., Andi, B., Fuchs, M.R., Shi, W., McSweeney, S., Hendrickson, W.A., Liu, Q.

(2022) IUCrJ 9: 768-777

DOI: https://doi.org/10.1107/S205225252200971X

Macromolecule Content

Total Structure Weight: 22.23 kDa
Atom Count: 1,668
Modelled Residue Count: 207
Deposited Residue Count: 207
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thaumatin-1	A	207	Thaumatococcus daniellii	Mutation(s): 0
UniProt
Find proteins for P02883 (Thaumatococcus daniellii) Explore P02883 Go to UniProtKB: P02883
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P02883
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.234
R-Value Work: 0.185
R-Value Observed: 0.188
Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.642	α = 90
b = 57.642	β = 90
c = 150.233	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing
BUCCANEER	model building

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-11-02

Deposition Author(s):

Hendrickson, W.A.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM116799

Revision History (Full details and data files)

Version 1.0: 2022-11-02
Type: Initial release
Version 1.1: 2022-11-09
Changes: Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.