8E8Z

9H2 Fab-Sabin poliovirus 1 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.15 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A human monoclonal antibody binds within the poliovirus receptor-binding site to neutralize all three serotypes.

Charnesky, A.J.Faust, J.E.Lee, H.Puligedda, R.D.Goetschius, D.J.DiNunno, N.M.Thapa, V.Bator, C.M.Cho, S.H.J.Wahid, R.Mahmood, K.Dessain, S.Chumakov, K.M.Rosenfeld, A.Hafenstein, S.L.

(2023) Nat Commun 14: 6335-6335

  • DOI: https://doi.org/10.1038/s41467-023-41052-9
  • Primary Citation of Related Structures:  
    8E8L, 8E8R, 8E8S, 8E8X, 8E8Y, 8E8Z

  • PubMed Abstract: 

    Global eradication of poliovirus remains elusive, and it is critical to develop next generation vaccines and antivirals. In support of this goal, we map the epitope of human monoclonal antibody 9H2 which is able to neutralize the three serotypes of poliovirus. Using cryo-EM we solve the near-atomic structures of 9H2 fragments (Fab) bound to capsids of poliovirus serotypes 1, 2, and 3. The Fab-virus complexes show that Fab interacts with the same binding mode for each serotype and at the same angle of interaction relative to the capsid surface. For each of the Fab-virus complexes, we find that the binding site overlaps with the poliovirus receptor (PVR) binding site and maps across and into a depression in the capsid called the canyon. No conformational changes to the capsid are induced by Fab binding for any complex. Competition binding experiments between 9H2 and PVR reveal that 9H2 impedes receptor binding. Thus, 9H2 outcompetes the receptor to neutralize poliovirus. The ability to neutralize all three serotypes, coupled with the critical importance of the conserved receptor binding site make 9H2 an attractive antiviral candidate for future development.


  • Organizational Affiliation

    Molecular, Cellular, and Integrative Biosciences Program, The Pennsylvania State University, University Park, PA, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP1A [auth 1]281Human poliovirus 1 strain SabinMutation(s): 0 
UniProt
Find proteins for P03301 (Poliovirus type 1 (strain Sabin))
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Go to UniProtKB:  P03301
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UniProt GroupP03301
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP2B [auth 2]263Human poliovirus 1 strain SabinMutation(s): 0 
UniProt
Find proteins for P03301 (Poliovirus type 1 (strain Sabin))
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Go to UniProtKB:  P03301
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UniProt GroupP03301
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP3C [auth 3]235Human poliovirus 1 strain SabinMutation(s): 0 
UniProt
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Go to UniProtKB:  P03301
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UniProt GroupP03301
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP4D [auth 4]68Human poliovirus 1 strain SabinMutation(s): 0 
UniProt
Find proteins for P03301 (Poliovirus type 1 (strain Sabin))
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Go to UniProtKB:  P03301
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UniProt GroupP03301
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
9H2 Fab heavy chainE [auth H]124Homo sapiensMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
9H2 Fab light chainF [auth L]109Homo sapiensMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.15 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/Office of the DirectorUnited StatesOD026822-01
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI107121-01
Bill & Melinda Gates FoundationUnited StatesOPP1135787

Revision History  (Full details and data files)

  • Version 1.0: 2023-06-21
    Type: Initial release
  • Version 1.1: 2023-10-18
    Changes: Data collection, Database references