8DE8

Cryo-EM structure of the zebrafish two pore domain K+ channel TREK1 (K2P2.1) in DDM/POPA mixed micelles


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.82 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Membrane phospholipids control gating of the mechanosensitive potassium leak channel TREK1.

Schmidpeter, P.A.M.Petroff 2nd, J.T.Khajoueinejad, L.Wague, A.Frankfater, C.Cheng, W.W.L.Nimigean, C.M.Riegelhaupt, P.M.

(2023) Nat Commun 14: 1077-1077

  • DOI: https://doi.org/10.1038/s41467-023-36765-w
  • Primary Citation of Related Structures:  
    8DE7, 8DE8, 8DE9

  • PubMed Abstract: 

    Tandem pore domain (K2P) potassium channels modulate resting membrane potentials and shape cellular excitability. For the mechanosensitive subfamily of K2Ps, the composition of phospholipids within the bilayer strongly influences channel activity. To examine the molecular details of K2P lipid modulation, we solved cryo-EM structures of the TREK1 K2P channel bound to either the anionic lipid phosphatidic acid (PA) or the zwitterionic lipid phosphatidylethanolamine (PE). At the extracellular face of TREK1, a PA lipid inserts its hydrocarbon tail into a pocket behind the selectivity filter, causing a structural rearrangement that recapitulates mutations and pharmacology known to activate TREK1. At the cytoplasmic face, PA and PE lipids compete to modulate the conformation of the TREK1 TM4 gating helix. Our findings demonstrate two distinct pathways by which anionic lipids enhance TREK1 activity and provide a framework for a model that integrates lipid gating with the effects of other mechanosensitive K2P modulators.


  • Organizational Affiliation

    Department of Anesthesiology, Weill Cornell Medical College, New York, NY, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Potassium channel, subfamily K, member 2aA [auth B],
B [auth A]
321Danio rerioMutation(s): 2 
Gene Names: kcnk2a
Membrane Entity: Yes 
UniProt
Find proteins for F1QAI2 (Danio rerio)
Explore F1QAI2 
Go to UniProtKB:  F1QAI2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF1QAI2
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.82 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1.2
MODEL REFINEMENTPHENIX1.19.2

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesK08GM132781
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM145918

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-08
    Type: Initial release