8CIO

Cryo-EM structure of the CupE pilus from Pseudomonas aeruginosa

  • Classification: PROTEIN FIBRIL
  • Organism(s): Pseudomonas aeruginosa PAO1
  • Mutation(s): No 

  • Deposited: 2023-02-10 Released: 2023-03-22 
  • Deposition Author(s): Boehning, J., Bharat, T.A.M.
  • Funding Organization(s): Wellcome Trust, Royal Society, The Vallee Foundation Inc., Leverhulme Trust, The Lister Institute of Preventive Medicine, Medical Research Council (MRC, United Kingdom)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Architecture of the biofilm-associated archaic Chaperone-Usher pilus CupE from Pseudomonas aeruginosa.

Bohning, J.Dobbelstein, A.W.Sulkowski, N.Eilers, K.von Kugelgen, A.Tarafder, A.K.Peak-Chew, S.Y.Skehel, M.Alva, V.Filloux, A.Bharat, T.A.M.

(2023) PLoS Pathog 19: e1011177-e1011177

  • DOI: https://doi.org/10.1371/journal.ppat.1011177
  • Primary Citation of Related Structures:  
    8CIO

  • PubMed Abstract: 

    Chaperone-Usher Pathway (CUP) pili are major adhesins in Gram-negative bacteria, mediating bacterial adherence to biotic and abiotic surfaces. While classical CUP pili have been extensively characterized, little is known about so-called archaic CUP pili, which are phylogenetically widespread and promote biofilm formation by several human pathogens. In this study, we present the electron cryomicroscopy structure of the archaic CupE pilus from the opportunistic human pathogen Pseudomonas aeruginosa. We show that CupE1 subunits within the pilus are arranged in a zigzag architecture, containing an N-terminal donor β-strand extending from each subunit into the next, where it is anchored by hydrophobic interactions, with comparatively weaker interactions at the rest of the inter-subunit interface. Imaging CupE pili on the surface of P. aeruginosa cells using electron cryotomography shows that CupE pili adopt variable curvatures in response to their environment, which might facilitate their role in promoting cellular attachment. Finally, bioinformatic analysis shows the widespread abundance of cupE genes in isolates of P. aeruginosa and the co-occurrence of cupE with other cup clusters, suggesting interdependence of cup pili in regulating bacterial adherence within biofilms. Taken together, our study provides insights into the architecture of archaic CUP pili, providing a structural basis for understanding their role in promoting cellular adhesion and biofilm formation in P. aeruginosa.


  • Organizational Affiliation

    Sir William Dunn School of Pathology, University of Oxford, Oxford, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
SCPU domain-containing protein
A, B, C, D, E
159Pseudomonas aeruginosa PAO1Mutation(s): 0 
UniProt
Find proteins for Q9HVE4 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore Q9HVE4 
Go to UniProtKB:  Q9HVE4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9HVE4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX1.2

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom202231/Z/16/Z
Royal SocietyUnited Kingdom202231/Z/16/Z
The Vallee Foundation Inc.United States--
Leverhulme TrustUnited Kingdom--
The Lister Institute of Preventive MedicineUnited Kingdom--
Medical Research Council (MRC, United Kingdom)United KingdomMR/K501256/1
Medical Research Council (MRC, United Kingdom)United KingdomMR/N013468/1

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-22
    Type: Initial release
  • Version 1.1: 2023-04-26
    Changes: Database references