Download MendeleyCrystal structure of Paradendryphiella salina PL7C alginate lyase mutant Y220F
Wilkens, C.To be published.
8C0M
Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant Y220F
- PDB DOI: https://doi.org/10.2210/pdb8C0M/pdb
- Classification: LYASE
- Organism(s): Paradendryphiella salina
- Expression System: Komagataella pastoris
- Mutation(s): Yes
- Deposited: 2022-12-18 Released: 2023-12-27
- Funding Organization(s): Other government
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.20 Å
- R-Value Free: 0.168
- R-Value Work: 0.139
- R-Value Observed: 0.140
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alginate lyase | 234 | Paradendryphiella salina | Mutation(s): 1 Gene Names: PsAlg7C |  | |
UniProt | |||||
Find proteins for A0A7I9C8Z1 (Paradendryphiella salina) Explore A0A7I9C8Z1 Go to UniProtKB: A0A7I9C8Z1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A7I9C8Z1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| ACT Query on ACT | B [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.20 Å
- R-Value Free: 0.168
- R-Value Work: 0.139
- R-Value Observed: 0.140
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 33.973 | α = 74.231 |
| b = 39.971 | β = 77.124 |
| c = 42.636 | γ = 69.814 |
| Software Name | Purpose |
|---|---|
| MxCuBE | data collection |
| PHENIX | refinement |
| autoPROC | data processing |
| XDS | data scaling |
| Coot | model building |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-12-27 Deposition Author(s): Wilkens, C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Other government | Denmark | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-12-27
Type: Initial release
