8BVH

Cryo-EM structure of the Hfq-Crc-amiE translation repression assembly.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Translational regulation by Hfq-Crc assemblies emerges from polymorphic ribonucleoprotein folding.

Dendooven, T.Sonnleitner, E.Blasi, U.Luisi, B.F.

(2023) EMBO J 42: e111129-e111129

  • DOI: https://doi.org/10.15252/embj.2022111129
  • Primary Citation of Related Structures:  
    8BVH, 8BVJ, 8BVM

  • PubMed Abstract: 

    The widely occurring bacterial RNA chaperone Hfq is a key factor in the post-transcriptional control of hundreds of genes in Pseudomonas aeruginosa. How this broadly acting protein can contribute to the regulatory requirements of many different genes remains puzzling. Here, we describe cryo-EM structures of higher order assemblies formed by Hfq and its partner protein Crc on control regions of different P. aeruginosa target mRNAs. Our results show that these assemblies have mRNA-specific quaternary architectures resulting from the combination of multivalent protein-protein interfaces and recognition of patterns in the RNA sequence. The structural polymorphism of these ribonucleoprotein assemblies enables selective translational repression of many different target mRNAs. This system elucidates how highly complex regulatory pathways can evolve with a minimal economy of proteinogenic components in combination with RNA sequence and fold.


  • Organizational Affiliation

    Department of Biochemistry, University of Cambridge, Cambridge, UK.


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-binding protein Hfq82Pseudomonas aeruginosaMutation(s): 0 
Gene Names: hfq
UniProt
Find proteins for Q9HUM0 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
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Go to UniProtKB:  Q9HUM0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9HUM0
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Catabolite repression control proteinM [auth H],
T [auth I],
V [auth B],
W [auth G]
262Pseudomonas aeruginosaMutation(s): 0 
Gene Names: 
crcexoAALP65_01013CAZ10_32350CGU42_22755DT376_09125E4V10_18585E5D53_27785E5Z62_16095E5Z63_23405ECC04_031800GNQ48_25180GUL26_21635IPC111_12165IPC112_13745IPC113_22800IPC114_17225IPC115_20105IPC116_23795IPC117_25625IPC118_26680IPC119_29495IPC120_26430IPC121_21355IPC122_22810IPC123_28525IPC124_13695IPC125_17530IPC126_13890IPC127_14855IPC128_10355IPC1295_10410IPC129_12605IPC1306_08360IPC1307_28280IPC1308_08250IPC1309_21675IPC130_13760IPC1310_18070IPC1311_27715IPC1312_27760IPC1313_12995IPC1314_23305IPC1315_13925IPC1316_03820IPC1317_21325IPC1319_28440IPC131_02850IPC1320_21925IPC1321_13670IPC1322_08030IPC1323_08650IPC1324_08655IPC1325_28715IPC1326_03390IPC1327_03390IPC1329_17010IPC132_06970IPC1330_11465IPC1331_28200IPC1332_29425IPC1333_11845IPC1334_25345IPC1335_28860IPC1336_09225IPC1337_29545IPC1339_28790IPC133_03360IPC1340_28180IPC1341_12600IPC1342_25815IPC1343_28125IPC1345_26635IPC1346_12480IPC1347_06540IPC1349_02495IPC134_02845IPC135_03360IPC137_05170IPC139_09290IPC140_06730IPC141_03365IPC142_07260IPC143_27785IPC144_27850IPC145_26565IPC146_07875IPC1474_29365IPC1476_04745IPC1477_00205IPC1478_21530IPC1479_05830IPC147_27530IPC1480_09320IPC1481_08100IPC1482_03390IPC1485_09070IPC1486_00200IPC1487_09730IPC1488_23420IPC1489_30180IPC148_13460IPC1490_30060IPC1491_03590IPC1492_29195IPC1494_10055IPC1496_07955IPC1498_13815IPC1499_04620IPC149_07870IPC1500_13950IPC1501_16685IPC1502_17430IPC1503_12005IPC1504_12415IPC1505_29825IPC1506_17410IPC1507_24155IPC1508_30170IPC1509_28695IPC150_28080IPC1510_28915IPC1511_30420IPC1512_29660IPC1515_25380IPC1516_25030IPC1517_08725IPC1518_07355IPC1519_08150IPC151_23655IPC1521_08375IPC1522_08210IPC1523_29925IPC152_28760IPC153_23345IPC154_17265IPC155_18160IPC156_17280IPC157_20765IPC1583_04500IPC1584_21700IPC1585_03355IPC1586_12135IPC1587_07630IPC1588_00205IPC1589_12850IPC158_22475IPC1590_04505IPC1591_26650IPC1592_03360IPC1593_28620IPC1594_08340IPC1595_28610IPC1596_08050IPC1597_07705IPC1598_07535IPC1599_12520IPC159_19675IPC1600_03625IPC1601_25405IPC1602_28860IPC1603_04480IPC1604_17280IPC1605_06980IPC1606_28085IPC161_21475IPC168_27215IPC172_03365IPC173_03365IPC174_04115IPC175_27990IPC176_00200IPC177_23820IPC178_12645IPC179_03225IPC180_03440IPC181_03440IPC182_27410IPC183_07620IPC184_23205IPC26_03230IPC27_25570IPC29_25820IPC30_25775IPC31_26330IPC32_23895IPC33_16805IPC34_07650IPC35_07645IPC36_11985IPC37_11015IPC38_07925IPC40_27470IPC41_03360IPC42_03360IPC43_23085IPC44_22815IPC45_21905IPC46_07155IPC47_03385IPC48_27355IPC49_03360IPC50_30570IPC51_28835IPC54_18710IPC55_30750IPC56_25845IPC574_05650IPC575_13820IPC576_07870IPC577_30530IPC578_05650IPC579_06085IPC57_11625IPC580_13610IPC582_05645IPC584_14310IPC586_05655IPC589_14875IPC58_27585IPC596_07850IPC597_03535IPC598_09625IPC599_08585IPC59_11860IPC600_09330IPC601_08240IPC602_08660IPC603_03370IPC604_03350IPC605_03350IPC606_24980IPC607_31450IPC608_28595IPC609_14300IPC60_11070IPC610_25045IPC611_03630IPC612_03625IPC613_03625IPC614_10255IPC615_03650IPC616_03650IPC618_03645IPC61_27990IPC620_03665IPC621_02265IPC622_09600IPC623_28715IPC624_03390IPC625_10215IPC627_06380IPC629_12080IPC630_04660IPC632_00200IPC633_27305IPC634_00200IPC64_27165IPC65_28585IPC66_27855IPC67_03650IPC68_03420IPC70_17275IPC71_27005IPC737_07685IPC73_27875IPC74_28395IPC75_18330IPC76_17335IPC77_23945IPC78_12120NCTC13621_05232PA52Ts2_6132PAMH19_3299

EC: 3.1.11.2
UniProt
Find proteins for G3XDB0 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore G3XDB0 
Go to UniProtKB:  G3XDB0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG3XDB0
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains LengthOrganismImage
amiEU [auth A]108Pseudomonas aeruginosa
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTREFMAC
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2023-06-07
    Type: Initial release