8BQ1

Herpes simplex virus type 1 protease

• PDB DOI: https://doi.org/10.2210/pdb8BQ1/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Human alphaherpesvirus 1 strain 17
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-11-18 Released: 2023-11-29 
• Deposition Author(s): Pachota, M., Grzywa, R., Plewka, J., Wilk, P., Mackereth, C., Czarna, A., Sienczyk, M., Pyrc, K.
• Funding Organization(s): Polish National Science Centre, Foundation for Polish Science

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.32 Å
• R-Value Free: 0.244 
• R-Value Work: 0.195 
• R-Value Observed: 0.197 

Literature

Herpes simplex virus type 1 protease

Pachota, M.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 26.74 kDa 
• Atom Count: 1,504 
• Modelled Residue Count: 194 
• Deposited Residue Count: 247 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Assemblin	A	247	Human alphaherpesvirus 1 strain 17	Mutation(s): 0  Gene Names: UL26 EC: 3.4.21.97
UniProt
Find proteins for P10210 (Human herpesvirus 1 (strain 17)) Explore P10210  Go to UniProtKB:  P10210

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	B [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.32 Å
• R-Value Free: 0.244 
• R-Value Work: 0.195 
• R-Value Observed: 0.197 
• Space Group: P 6₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.08	α = 90
b = 70.08	β = 90
c = 77.33	γ = 120

Software Package:

Software Name	Purpose
XDS	data scaling
PHASER	phasing
PHENIX	refinement
XDS	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-11-29 
Deposition Author(s): Pachota, M., Grzywa, R., Plewka, J., Wilk, P., Mackereth, C., Czarna, A., Sienczyk, M., Pyrc, K.

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Funding Organization	Location	Grant Number
Polish National Science Centre	Poland	2017/27/N/NZ6/02328
Foundation for Polish Science	Poland	TEAM TECH CORE FACILITY/2017-4/6

Revision History  

• Version 1.0: 2023-11-29
  Type: Initial release