8BDZ

Hepatitis B virus core antigen (HBc) with the insertion of four external domains of the influenza A M2 protein (HBc/4M2e) with T=4 topology


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.13 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Inside and outside of virus-like particles HBc and HBc/4M2e: A comprehensive study of the structure.

Egorov, V.V.Shvetsov, A.V.Pichkur, E.B.Shaldzhyan, A.A.Zabrodskaya, Y.A.Vinogradova, D.S.Nekrasov, P.A.Gorshkov, A.N.Garmay, Y.P.Kovaleva, A.A.Stepanova, L.A.Tsybalova, L.M.Shtam, T.A.Myasnikov, A.G.Konevega, A.L.

(2022) Biophys Chem 293: 106943-106943

  • DOI: https://doi.org/10.1016/j.bpc.2022.106943
  • Primary Citation of Related Structures:  
    8BDZ, 8BER

  • PubMed Abstract: 

    Hepatitis B virus core antigen (HBc) with the insertion of four external domains of the influenza A M2 protein (HBc/4M2e) form virus-like particles whose structure was studied using a combination of molecular modeling and cryo-electron microscopy (cryo-EM). It was also shown that self-assembling of the particles occurs inside bacterial cells, but despite the big inner volume of the core shell particle, purified HBc/4M2e contain an insignificant amount of bacterial proteins. It was shown that a fragment of the M2e corresponding to 4M2e insertion is prone to formation of amyloid-like fibrils. However, as the part of the immunodominant loop, M2e insertion does not show a tendency to intermolecular interaction. A full-atomic HBc-4M2e model with the resolution of about 3 Å (3.13 Å for particles of Т = 4 symmetry, 3.7 Å for particles of Т = 3 symmetry) was obtained by molecular modeling methods based on cryo-EM data.


  • Organizational Affiliation

    Petersburg Nuclear Physics Institute named by B.P. Konstantinov of National Research Centre «Kurchatov Institute», Orlova roscha 1, Gatchina 188300, Russian Federation; Smorodintsev Research Institute of Influenza, Russian Ministry of Health, 197376, Prof. Popov St. 15/17, St. Petersburg, Russian Federation; National Research Center "Kurchatov Institute", Akademika Kurchatova pl. 1, 123182 Moscow, Russian Federation; Institute of Experimental Medicine, Academika Pavlova, 12, 197376 St. Petersburg, Russian Federation. Electronic address: sondyn@yandex.ru.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Core protein,Matrix protein 2,External core antigen
A, B, C
289Hepatitis B virus adw/991Influenza A virus (A/Malaya/302/1954(H1N1))Hepatitis B virus ayw/France/Tiollais/1979Mutation(s): 0 
Gene Names: prec/CMM2
UniProt
Find proteins for A4K144 (Influenza A virus (strain A/Malaysia:Malaya/302/1954 H1N1))
Explore A4K144 
Go to UniProtKB:  A4K144
Find proteins for P0C573 (Hepatitis B virus genotype D subtype ayw (isolate France/Tiollais/1979))
Explore P0C573 
Go to UniProtKB:  P0C573
Find proteins for Q9E0P3 (Hepatitis B virus)
Explore Q9E0P3 
Go to UniProtKB:  Q9E0P3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsA4K144Q9E0P3P0C573
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.13 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Russian Science FoundationRussian Federation19-74-20146

Revision History  (Full details and data files)

  • Version 1.0: 2022-12-28
    Type: Initial release