8BCU

Cryo-EM structure of the proximal end of bacteriophage T5 tail, after interaction with its receptor : p142 tail terminator protein hexamer and pb6 tail tube protein trimer

PDB DOI: https://doi.org/10.2210/pdb8BCU/pdb
EM Map EMD-15968: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Escherichia phage T5
Mutation(s): No

Deposited: 2022-10-17 Released: 2023-11-01
Deposition Author(s): Linares, R., Effantin, G., Breyton, C.
Funding Organization(s): Agence Nationale de la Recherche (ANR)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of the proximal end of bacteriophage T5 tail, in its native state and after interaction with its bacterial receptor

Linares, R., Effantin, G., Breyton, C.

To be published.

Macromolecule Content

Total Structure Weight: 261.65 kDa
Atom Count: 18,279
Modelled Residue Count: 2,349
Deposited Residue Count: 2,358
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tail tube terminator protein p142	A [auth C] B [auth D] D [auth A] E [auth B] G [auth E] A [auth C], B [auth D], D [auth A], E [auth B], G [auth E], H [auth F]	161	Escherichia phage T5	Mutation(s): 0
UniProt
Find proteins for Q6QGE1 (Escherichia phage T5) Explore Q6QGE1 Go to UniProtKB: Q6QGE1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6QGE1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Tail tube protein	C [auth H], F [auth G], I	464	Escherichia phage T5	Mutation(s): 0
UniProt
Find proteins for Q6QGE2 (Escherichia phage T5) Explore Q6QGE2 Go to UniProtKB: Q6QGE2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6QGE2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.05 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	3.0/3.1
MODEL REFINEMENT	PHENIX
MODEL REFINEMENT	Coot

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-11-01

Deposition Author(s):

Funding Organization	Location	Grant Number
Agence Nationale de la Recherche (ANR)	France	ANR-16-CE11-0027
Agence Nationale de la Recherche (ANR)	France	ANR-21-CE11-0023

Revision History (Full details and data files)

Version 1.0: 2023-11-01
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.