8B1O

Crystal structure of SUDV VP40 C314S mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.187 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

The C-terminus of Sudan ebolavirus VP40 contains a functionally important CX n C motif, a target for redox modifications.

Werner, A.D.Schauflinger, M.Norris, M.J.Kluver, M.Trodler, A.Herwig, A.Brandstadter, C.Dillenberger, M.Klebe, G.Heine, A.Saphire, E.O.Becker, K.Becker, S.

(2023) Structure 31: 1038

  • DOI: https://doi.org/10.1016/j.str.2023.06.004
  • Primary Citation of Related Structures:  
    8B1O, 8B1P, 8B3X

  • PubMed Abstract: 

    The Ebola virus matrix protein VP40 mediates viral budding and negatively regulates viral RNA synthesis. The mechanisms by which these two functions are exerted and regulated are unknown. Using a high-resolution crystal structure of Sudan ebolavirus (SUDV) VP40, we show here that two cysteines in the flexible C-terminal arm of VP40 form a stabilizing disulfide bridge. Notably, the two cysteines are targets of posttranslational redox modifications and interact directly with the host`s thioredoxin system. Mutation of the cysteines impaired the budding function of VP40 and relaxed its inhibitory role for viral RNA synthesis. In line with these results, the growth of recombinant Ebola viruses carrying cysteine mutations was impaired and the released viral particles were elongated. Our results revealed the exact positions of the cysteines in the C-terminal arm of SUDV VP40. The cysteines and/or their redox status are critically involved in the differential regulation of viral budding and viral RNA synthesis.


  • Organizational Affiliation

    Institute for Virology, Philipps-University of Marburg, Marburg, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Matrix protein VP40297Sudan ebolavirusMutation(s): 2 
Gene Names: VP40
UniProt
Find proteins for Q5XX06 (Sudan ebolavirus (strain Human/Uganda/Gulu/2000))
Explore Q5XX06 
Go to UniProtKB:  Q5XX06
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5XX06
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.187 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.247α = 90
b = 91.005β = 96.06
c = 48.433γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
LOEWE Center DRUIDGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2023-06-21
    Type: Initial release
  • Version 1.1: 2023-07-12
    Changes: Database references
  • Version 1.2: 2023-09-06
    Changes: Data collection, Database references, Source and taxonomy, Structure summary
  • Version 1.3: 2023-09-20
    Changes: Database references
  • Version 1.4: 2024-02-07
    Changes: Refinement description