7Z5H

human Zn MATCAP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.232 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Posttranslational modification of microtubules by the MATCAP detyrosinase.

Landskron, L.Bak, J.Adamopoulos, A.Kaplani, K.Moraiti, M.van den Hengel, L.G.Song, J.Y.Bleijerveld, O.B.Nieuwenhuis, J.Heidebrecht, T.Henneman, L.Moutin, M.J.Barisic, M.Taraviras, S.Perrakis, A.Brummelkamp, T.R.

(2022) Science 376: eabn6020-eabn6020

  • DOI: https://doi.org/10.1126/science.abn6020
  • Primary Citation of Related Structures:  
    7Z5G, 7Z5H, 7Z6S

  • PubMed Abstract: 

    The detyrosination-tyrosination cycle involves the removal and religation of the C-terminal tyrosine of α-tubulin and is implicated in cognitive, cardiac, and mitotic defects. The vasohibin-small vasohibin-binding protein (SVBP) complex underlies much, but not all, detyrosination. We used haploid genetic screens to identify an unannotated protein, microtubule associated tyrosine carboxypeptidase (MATCAP), as a remaining detyrosinating enzyme. X-ray crystallography and cryo-electron microscopy structures established MATCAP's cleaving mechanism, substrate specificity, and microtubule recognition. Paradoxically, whereas abrogation of tyrosine religation is lethal in mice, codeletion of MATCAP and SVBP is not. Although viable, defective detyrosination caused microcephaly, associated with proliferative defects during neurogenesis, and abnormal behavior. Thus, MATCAP is a missing component of the detyrosination-tyrosination cycle, revealing the importance of this modification in brain formation.


  • Organizational Affiliation

    Oncode Institute, Division of Biochemistry, Netherlands Cancer Institute, 1066CX Amsterdam, Netherlands.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein KIAA0895-like
A, B, C, D
335Homo sapiensMutation(s): 0 
Gene Names: KIAA0895L
UniProt & NIH Common Fund Data Resources
Find proteins for Q68EN5 (Homo sapiens)
Explore Q68EN5 
Go to UniProtKB:  Q68EN5
PHAROS:  Q68EN5
GTEx:  ENSG00000196123 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ68EN5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.232 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 55.646α = 90
b = 88.067β = 90.767
c = 165.581γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing
Cootmodel building
MolProbitymodel building

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Oncode InstituteNetherlands--

Revision History  (Full details and data files)

  • Version 1.0: 2022-05-11
    Type: Initial release
  • Version 1.1: 2022-06-01
    Changes: Database references
  • Version 1.2: 2024-01-31
    Changes: Data collection, Derived calculations, Refinement description