7YXX

Cryo-EM structure of USP9X

PDB DOI: https://doi.org/10.2210/pdb7YXX/pdb
EM Map EMD-14368: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2022-02-16 Released: 2022-03-02
Deposition Author(s): Deme, J.C., Halabelian, L., Arrowsmith, C.H., Lea, S.M., Structural Genomics Consortium (SGC)
Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of USP9X

Halabelian, L., Deme, J.C., Lea, S.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

To be published.

Macromolecule Content

Total Structure Weight: 881.64 kDa
Atom Count: 42,357
Modelled Residue Count: 5,249
Deposited Residue Count: 7,737
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable ubiquitin carboxyl-terminal hydrolase FAF-X	A, B, C	2,579	Homo sapiens	Mutation(s): 0 Gene Names: USP9X, DFFRX, FAM, USP9 EC: 3.4.19.12
UniProt & NIH Common Fund Data Resources
Find proteins for Q93008 (Homo sapiens) Explore Q93008 Go to UniProtKB: Q93008
PHAROS: Q93008 GTEx: ENSG00000124486
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q93008
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-03-02

Deposition Author(s):

Arrowsmith, C.H.

Structural Genomics Consortium (SGC)

Funding Organization	Location	Grant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)	United States	--

Revision History (Full details and data files)

Version 1.0: 2022-03-02
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.