7YQO

Xcc Nicotinamide Phosphoribosyltransferase

• PDB DOI: https://doi.org/10.2210/pdb7YQO/pdb

• Classification: TRANSFERASE
• Organism(s): Xanthomonas campestris pv. campestris str. 8004
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2022-08-08 Released: 2024-02-14 
• Deposition Author(s): Xu, G.L., Ming, Z.H.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.79 Å
• R-Value Free: 0.199 
• R-Value Work: 0.178 
• R-Value Observed: 0.179 

Literature

Structure of Xanthomonas campestris pv. campestris Nicotinamide Phosphoribosyltransferase: insights into bacterial NAD+ biosynthesis from the salvage pathway

Xu, G.L., Ming, Z.H.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 106.52 kDa 
• Atom Count: 7,651 
• Modelled Residue Count: 912 
• Deposited Residue Count: 964 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pre-B cell enhancing factor related protein	A, B	482	Xanthomonas campestris pv. campestris str. 8004	Mutation(s): 0  Gene Names: XC_0719
UniProt
Find proteins for A0A0H2X5R2 (Xanthomonas campestris pv. campestris (strain 8004)) Explore A0A0H2X5R2  Go to UniProtKB:  A0A0H2X5R2

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL (Subject of Investigation/LOI)	C [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.79 Å
• R-Value Free: 0.199 
• R-Value Work: 0.178 
• R-Value Observed: 0.179 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 91.61	α = 90
b = 151.48	β = 90
c = 70.81	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-02-14 
Deposition Author(s): Xu, G.L., Ming, Z.H.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32160064

Revision History  

• Version 1.0: 2024-02-14
  Type: Initial release