7XB2

CVB5-intermediate altered particle containing VP1/VP2/VP3 and RNA genome

  • Classification: VIRUS
  • Organism(s): Coxsackievirus B5
  • Expression System: Homo sapiens
  • Mutation(s): No 

  • Deposited: 2022-03-20 Released: 2022-03-30 
  • Deposition Author(s): Yang, P., Wang, K.
  • Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.81 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Atomic Structures of Coxsackievirus B5 Provide Key Information on Viral Evolution and Survival.

Yang, P.Shi, D.Fu, J.Zhang, L.Chen, R.Zheng, B.Wang, X.Xu, S.Zhu, L.Wang, K.

(2022) J Virol 96: e0010522-e0010522

  • DOI: https://doi.org/10.1128/jvi.00105-22
  • Primary Citation of Related Structures:  
    7WL3, 7XB2

  • PubMed Abstract: 

    Coxsackie virus B5 (CVB5), a main serotype in human Enterovirus B (EVB), can cause severe viral encephalitis and aseptic meningitis among infants and children. Currently, there is no approved vaccine or antiviral therapy available against CVB5 infection. Here, we determined the atomic structures of CVB5 in three forms: mature full (F) particle (2.73 Å), intermediate altered (A) particle (2.81 Å), and procapsid empty (E) particle (2.95 Å). Structural analysis of F particle of CVB5 unveiled similar structures of "canyon," "puff," and "knob" as those other EV-Bs. We observed structural rearrangements that are alike during the transition from F to A particle, indicative of similar antigenicity, cell entry, and uncoating mechanisms shared by all EV-Bs. Further comparison of structures and sequences among all structure-known EV-Bs revealed that while the residues targeted by neutralizing MAbs are diversified and drive the evolution of EV-Bs, the relative conserved residues recognized by uncoating receptors could serve as the basis for the development of antiviral vaccines and therapeutics. IMPORTANCE As one of the main serotypes in Enterovirus B, CVB5 has been commonly reported in recent years. The atomic structures of CVB5 shown here revealed classical features found in EV-Bs and the structural rearrangement occurring during particle expansion and uncoating. Also, structure- and sequence-based comparison between CVB5 and other structure-known EV-Bs screened out key domains important for viral evolution and survival. All these provide insights into the development of vaccine and therapeutics for EV-Bs.


  • Organizational Affiliation

    Key Laboratory of Infection and Immunity, Institute of Biophysicsgrid.418856.6, Chinese Academy of Sciences, Beijing, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Genome polyproteinA [auth 1]233Coxsackievirus B5Mutation(s): 0 
Gene Names: VP1
UniProt
Find proteins for A0A348FI90 (Coxsackievirus B5)
Explore A0A348FI90 
Go to UniProtKB:  A0A348FI90
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A348FI90
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Genome polyproteinB [auth 2]248Coxsackievirus B5Mutation(s): 0 
Gene Names: polyprotein
EC: 3.4.22.29 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.4.22.28 (PDB Primary Data), 2.7.7.48 (PDB Primary Data)
UniProt
Find proteins for A0A6M4MJ36 (Coxsackievirus B5)
Explore A0A6M4MJ36 
Go to UniProtKB:  A0A6M4MJ36
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UniProt GroupA0A6M4MJ36
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Genome polyproteinC [auth 3]238Coxsackievirus B5Mutation(s): 0 
Gene Names: polyprotein
EC: 3.4.22.29 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.4.22.28 (PDB Primary Data), 2.7.7.48 (PDB Primary Data)
UniProt
Find proteins for A0A6M4MJ36 (Coxsackievirus B5)
Explore A0A6M4MJ36 
Go to UniProtKB:  A0A6M4MJ36
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UniProt GroupA0A6M4MJ36
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.81 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31900873

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-30
    Type: Initial release
  • Version 1.1: 2022-10-12
    Changes: Database references