Cryo-EM evidence of viral N-glycosylation reveal receptor binding mechanisms of alphavirus M1
Song, D., Jia, X.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
E1 glycoprotein | A, D [auth E], G [auth I], J [auth M] | 438 | Alphavirus M1 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for Q5Y388 (Getah virus) Explore Q5Y388  Go to UniProtKB:  Q5Y388 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5Y388 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
E2 glycoprotein | B, E [auth F], H [auth J], K [auth N] | 422 | Alphavirus M1 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for Q5Y388 (Getah virus) Explore Q5Y388  Go to UniProtKB:  Q5Y388 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5Y388 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Capsid protein | C, F [auth G], I [auth K], L [auth O] | 267 | Alphavirus M1 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for Q5Y388 (Getah virus) Explore Q5Y388  Go to UniProtKB:  Q5Y388 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5Y388 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG (Subject of Investigation/LOI) Query on NAG | M [auth A] N [auth B] O [auth B] P [auth E] Q [auth F] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | jspr |
Funding Organization | Location | Grant Number |
---|---|---|
National Natural Science Foundation of China (NSFC) | China | 81973342 |
National Natural Science Foundation of China (NSFC) | China | 81773751 |
National Natural Science Foundation of China (NSFC) | China | 81772675 |
National Natural Science Foundation of China (NSFC) | China | 81903652 |
National Natural Science Foundation of China (NSFC) | China | 81802536 |