Download MendeleyCrystal structure of apo eosinophil cationic protein (ribonuclease 3) from Macaca fascicularis (MfECP)
Thi Thanh, Q.T., Pham, N.T.H., Calmettes, C., Doucet, N.To be published.
7TY1
Crystal structure of apo eosinophil cationic protein (ribonuclease 3) from Macaca fascicularis (MfECP)
- PDB DOI: https://doi.org/10.2210/pdb7TY1/pdb
- Classification: HYDROLASE
- Organism(s): Macaca fascicularis
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-02-11 Released: 2023-08-16
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Natural Sciences and Engineering Research Council (NSERC, Canada), Fonds de Recherche du Quebec - Sante (FRQS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.250
- R-Value Work: 0.207
- R-Value Observed: 0.211
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Eosinophil cationic protein | 134 | Macaca fascicularis | Mutation(s): 0 Gene Names: RNASE3, RNS3 EC: 3.1.27 |  | |
UniProt | |||||
Find proteins for P47779 (Macaca fascicularis) Explore P47779 Go to UniProtKB: P47779 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P47779 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CIT Query on CIT | C [auth A], D [auth A], G [auth A], H [auth A] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | E [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | B [auth A], F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.250
- R-Value Work: 0.207
- R-Value Observed: 0.211
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 37.33 | α = 90 |
| b = 39.27 | β = 90 |
| c = 76.02 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-08-16 Deposition Author(s): Tran, T.T.Q., Pham, N.T.H., Calmettes, C., Doucet, N.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01GM105978 |
| Natural Sciences and Engineering Research Council (NSERC, Canada) | Canada | RGPIN201605557 |
| Natural Sciences and Engineering Research Council (NSERC, Canada) | Canada | RGPIN201706091 |
| Natural Sciences and Engineering Research Council (NSERC, Canada) | Canada | CREATE511956 |
| Fonds de Recherche du Quebec - Sante (FRQS) | Canada | 251848 |
| Fonds de Recherche du Quebec - Sante (FRQS) | Canada | 281993 |
Revision History (Full details and data files)
- Version 1.0: 2023-08-16
Type: Initial release
