7SHM

Cryo-EM structure of ATP-bound human peroxisomal fatty acid transporter ABCD1

• PDB DOI: https://doi.org/10.2210/pdb7SHM/pdb
• EM Map EMD-25130: EMDB EMDataResource

• Classification: LIPID TRANSPORT
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): Yes 
• Membrane Protein: Yes  OPMPDBTMMemProtMDmpstruc


• Deposited: 2021-10-09 Released: 2021-11-03 
• Deposition Author(s): Wang, R., Li, X.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Welch Foundation, Damon Runyon Cancer Research Foundation

---

Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.14 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural basis of acyl-CoA transport across the peroxisomal membrane by human ABCD1.

Wang, R., Qin, Y., Li, X.

(2022) Cell Res 32: 214-217

• PubMed: 34754073 
• DOI: https://doi.org/10.1038/s41422-021-00585-8
• Primary Citation of Related Structures:  
  7SHM, 7SHN

---

Organizational Affiliation: 

Department of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, TX, USA.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 169.09 kDa 
• Atom Count: 9,186 
• Modelled Residue Count: 1,142 
• Deposited Residue Count: 1,506 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP-binding cassette sub-family D member 1	A, B	753	Homo sapiens	Mutation(s): 1  Gene Names: ABCD1, ALD EC: 7.6.2.4 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P33897 (Homo sapiens) Explore P33897  Go to UniProtKB:  P33897
PHAROS:  P33897 GTEx:  ENSG00000101986

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ATP	C [auth A], D [auth B]	ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.14 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-11-03 
Deposition Author(s): Wang, R., Li, X.

---

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	--
Welch Foundation	United States	--
Damon Runyon Cancer Research Foundation	United States	--

Revision History  

• Version 1.0: 2021-11-03
  Type: Initial release
  
• Version 1.1: 2021-11-24
  Changes: Database references
• Version 1.2: 2022-02-16
  Changes: Database references