7SDE

Cryo-EM structure of Nse5/6 heterodimer

• PDB DOI: https://doi.org/10.2210/pdb7SDE/pdb
• EM Map EMD-23517: EMDB EMDataResource

• Classification: STRUCTURAL PROTEIN
• Organism(s): Saccharomyces cerevisiae S288C
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-09-29 Released: 2021-10-13 
• Deposition Author(s): Yu, Y., Patel, D.J., Zhao, X.L.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.20 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

The cryo-EM structure of Nse5/6 complex with the C terminal part of Nse5

Yu, Y., Patel, D.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 131.63 kDa 
• Atom Count: 5,734 
• Modelled Residue Count: 726 
• Deposited Residue Count: 1,141 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Non-structural maintenance of chromosome element 5	A	555	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: NSE5, YML023C
UniProt
Find proteins for Q03718 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q03718  Go to UniProtKB:  Q03718

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-like protein SMT3,DNA repair protein KRE29 chimera	B	586	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: SMT3, YDR510W, D9719.15, KRE29, YER038C
UniProt
Find proteins for Q12306 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12306  Go to UniProtKB:  Q12306
Find proteins for P40026 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40026  Go to UniProtKB:  P40026
UniProt Groups	P40026Q12306

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.20 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-10-13 
Deposition Author(s): Yu, Y., Patel, D.J., Zhao, X.L.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R01GM131058

Revision History  

• Version 1.0: 2021-10-13
  Type: Initial release