7S9Y

Helicobacter Hepaticus CcsBA Open Conformation


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.56 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Cryo-EM of CcsBA reveals the basis for cytochrome c biogenesis and heme transport.

Mendez, D.L.Lowder, E.P.Tillman, D.E.Sutherland, M.C.Collier, A.L.Rau, M.J.Fitzpatrick, J.A.J.Kranz, R.G.

(2022) Nat Chem Biol 18: 101-108

  • DOI: https://doi.org/10.1038/s41589-021-00935-y
  • Primary Citation of Related Structures:  
    7S9Y, 7S9Z

  • PubMed Abstract: 

    Although the individual structures and respiratory functions of cytochromes are well studied, the structural basis for their assembly, including transport of heme for attachment, are unknown. We describe cryo-electron microscopy (cryo-EM) structures of CcsBA, a bifunctional heme transporter and cytochrome c (cyt c) synthase. Models built from the cryo-EM densities show that CcsBA is trapped with heme in two conformations, herein termed the closed and open states. The closed state has heme located solely at a transmembrane (TM) site, with a large periplasmic domain oriented such that access of heme to the cytochrome acceptor is denied. The open conformation contains two heme moieties, one in the TM-heme site and another in an external site (P-heme site). The presence of heme in the periplasmic site at the base of a chamber induces a large conformational shift that exposes the heme for reaction with apocytochrome c (apocyt c). Consistent with these structures, in vivo and in vitro cyt c synthase studies suggest a mechanism for transfer of the periplasmic heme to cytochrome.


  • Organizational Affiliation

    Department of Biology, Washington University in St. Louis, St. Louis, MO, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c biogenesis protein942Helicobacter hepaticusMutation(s): 0 
Gene Names: ccsBA
Membrane Entity: Yes 
UniProt
Find proteins for Q7VHG9 (Helicobacter hepaticus (strain ATCC 51449 / 3B1))
Explore Q7VHG9 
Go to UniProtKB:  Q7VHG9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7VHG9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.56 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC3.2
MODEL REFINEMENTPHENIX1.17.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)GM47909
Childrens Discovery Institute of Washington University and St. Louis Childrens Hospital2015-505
Childrens Discovery Institute of Washington University and St. Louis Childrens Hospital2019-813
Foundation for Barnes-Jewish Hospital3770
Chan Zuckerberg Initiative2020-225726

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-22
    Type: Initial release
  • Version 1.1: 2022-01-05
    Changes: Database references
  • Version 1.2: 2022-01-12
    Changes: Database references