Crystal structure of MBD2 with DNA
Liu, K., Dong, A., Loppnau, P., Edwards, A.M., Arrowsmith, C.H., Min, J., Structural Genomics Consortium (SGC)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Methyl-CpG-binding domain protein 2 | 79 | Homo sapiens | Mutation(s): 0  Gene Names: MBD2 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UBB5 (Homo sapiens) Explore Q9UBB5  Go to UniProtKB:  Q9UBB5 | |||||
PHAROS:  Q9UBB5 GTEx:  ENSG00000134046  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9UBB5 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*GP*CP*CP*AP*A)-R(P*(5MC))-D(P*GP*TP*TP*GP*GP*C)-3') | 12 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
UNX Query on UNX | D [auth A], E [auth C] | UNKNOWN ATOM OR ION X |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 37.599 | α = 90 |
b = 71.992 | β = 90 |
c = 126.107 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
Aimless | data scaling |
PDB_EXTRACT | data extraction |
PHASER | phasing |
XDS | data reduction |