7QRU

Structure of Bacillus pseudofirmus Mrp antiporter complex, monomer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.24 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Ion transfer mechanisms in Mrp-type antiporters from high resolution cryoEM and molecular dynamics simulations.

Lee, Y.Haapanen, O.Altmeyer, A.Kuhlbrandt, W.Sharma, V.Zickermann, V.

(2022) Nat Commun 13: 6091-6091

  • DOI: https://doi.org/10.1038/s41467-022-33640-y
  • Primary Citation of Related Structures:  
    7QRU

  • PubMed Abstract: 

    Multiple resistance and pH adaptation (Mrp) cation/proton antiporters are essential for growth of a variety of halophilic and alkaliphilic bacteria under stress conditions. Mrp-type antiporters are closely related to the membrane domain of respiratory complex I. We determined the structure of the Mrp antiporter from Bacillus pseudofirmus by electron cryo-microscopy at 2.2 Å resolution. The structure resolves more than 99% of the sidechains of the seven membrane subunits MrpA to MrpG plus 360 water molecules, including ~70 in putative ion translocation pathways. Molecular dynamics simulations based on the high-resolution structure revealed details of the antiport mechanism. We find that switching the position of a histidine residue between three hydrated pathways in the MrpA subunit is critical for proton transfer that drives gated trans-membrane sodium translocation. Several lines of evidence indicate that the same histidine-switch mechanism operates in respiratory complex I.


  • Organizational Affiliation

    Department of Structural Biology, Max Planck Institute of Biophysics, 60438, Frankfurt am Main, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Na+/H+ antiporter subunit DA [auth D]493Alkalihalophilus pseudofirmusMutation(s): 0 
Gene Names: BTR22_14495
Membrane Entity: Yes 
UniProt
Find proteins for A0A1Q9PMS5 (Alkalihalophilus pseudofirmus)
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Go to UniProtKB:  A0A1Q9PMS5
Entity Groups  
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UniProt GroupA0A1Q9PMS5
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Na+/H+ antiporter subunit AB [auth A]805Alkalihalophilus pseudofirmusMutation(s): 0 
Gene Names: BTR22_14510
Membrane Entity: Yes 
UniProt
Find proteins for A0A1Q9PN15 (Alkalihalophilus pseudofirmus)
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UniProt GroupA0A1Q9PN15
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Na(+)/H(+) antiporter subunit BC [auth B]144Alkalihalophilus pseudofirmusMutation(s): 0 
Gene Names: BTR22_14505
Membrane Entity: Yes 
UniProt
Find proteins for A0A1Q9PN06 (Alkalihalophilus pseudofirmus)
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UniProt GroupA0A1Q9PN06
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Na(+)/H(+) antiporter subunit CD [auth C]112Alkalihalophilus pseudofirmusMutation(s): 0 
Gene Names: mrpCBpOF4_13200
Membrane Entity: Yes 
UniProt
Find proteins for Q9RGZ3 (Alkalihalophilus pseudofirmus (strain ATCC BAA-2126 / JCM 17055 / OF4))
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UniProt GroupQ9RGZ3
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Na+/H+ antiporter subunit EE,
H [auth e]
158Alkalihalophilus pseudofirmusMutation(s): 0 
Gene Names: BTR22_14490
Membrane Entity: Yes 
UniProt
Find proteins for A0A1Q9PMT4 (Alkalihalophilus pseudofirmus)
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UniProt GroupA0A1Q9PMT4
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Na(+)/H(+) antiporter subunit F91Alkalihalophilus pseudofirmusMutation(s): 0 
Gene Names: BTR22_14485
Membrane Entity: Yes 
UniProt
Find proteins for Q9RGZ0 (Alkalihalophilus pseudofirmus (strain ATCC BAA-2126 / JCM 17055 / OF4))
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UniProt GroupQ9RGZ0
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Na+/H+ antiporter subunit G1133Alkalihalophilus pseudofirmusMutation(s): 0 
Gene Names: BTR22_14480
Membrane Entity: Yes 
UniProt
Find proteins for Q9RGY9 (Alkalihalophilus pseudofirmus (strain ATCC BAA-2126 / JCM 17055 / OF4))
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UniProt GroupQ9RGY9
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.24 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Released Date: 2022-11-09 
  • Deposition Author(s): Lee, Y.

Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyZI 552/5-1

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-09
    Type: Initial release