Download MendeleyCrystal structure of HLA-B*08:01 in complex with ELRSRYWAI viral peptide
Mavridis, G.To be published.
7NUI
Crystal structure of HLA-B*08:01 in complex with ELRSRYWAI viral peptide
- PDB DOI: https://doi.org/10.2210/pdb7NUI/pdb
- Classification: PEPTIDE BINDING PROTEIN
- Organism(s): Homo sapiens, Influenza A virus
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2021-03-12 Released: 2021-04-14
- Funding Organization(s): Hellenic Foundation for Research and Innovation (HFRI)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.282
- R-Value Work: 0.230
- R-Value Observed: 0.232
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HLA-B*08:01 heavy chain | 276 | Homo sapiens | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-2-microglobulin | 100 | Homo sapiens | Mutation(s): 0 Gene Names: B2M, CDABP0092, HDCMA22P |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61769 (Homo sapiens) Explore P61769 Go to UniProtKB: P61769 | |||||
PHAROS: P61769 GTEx: ENSG00000166710 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P61769 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| GLU-LEU-ARG-SER-ARG-TYR-TRP-ALA-ILE | C [auth D] | 9 | Influenza A virus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q9Q0U8 (Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd)) Explore Q9Q0U8 Go to UniProtKB: Q9Q0U8 | |||||
Entity Groups | |||||
| UniProt Group | Q9Q0U8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG (Subject of Investigation/LOI) Query on PEG | H [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| EDO (Subject of Investigation/LOI) Query on EDO | D [auth A], E [auth A], F [auth A], G [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.282
- R-Value Work: 0.230
- R-Value Observed: 0.232
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.236 | α = 90 |
| b = 40.206 | β = 101.53 |
| c = 125.978 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-04-14 Deposition Author(s): Mavridis, G., Giastas, P., Mpakali, A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Hellenic Foundation for Research and Innovation (HFRI) | Greece | 157 |
Revision History (Full details and data files)
- Version 1.0: 2021-04-14
Type: Initial release - Version 1.1: 2024-01-31
Changes: Data collection, Database references, Refinement description
