7LTM

Hum8 capsid


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.49 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Receptor Switching in Newly Evolved Adeno-associated Viruses.

Havlik, L.P.Das, A.Mietzsch, M.Oh, D.K.Ark, J.McKenna, R.Agbandje-McKenna, M.Asokan, A.

(2021) J Virol 95: e0058721-e0058721

  • DOI: https://doi.org/10.1128/JVI.00587-21
  • Primary Citation of Related Structures:  
    7LTM

  • PubMed Abstract: 

    Adeno-associated viruses utilize different glycans and the AAV receptor (AAVR) for cellular attachment and entry. Directed evolution has yielded new AAV variants; however, structure-function correlates underlying their improved transduction are generally overlooked. Here, we report that infectious cycling of structurally diverse AAV surface loop libraries yields functionally distinct variants. Newly evolved variants show enhanced cellular binding, uptake, and transduction, but through distinct mechanisms. Using glycan-based and genome-wide CRISPR knockout screens, we discover that one AAV variant acquires the ability to recognize sulfated glycosaminoglycans, while another displays receptor switching from AAVR to integrin β1 (ITGB1). A previously evolved variant, AAVhum.8, preferentially utilizes the ITGB1 receptor over AAVR. Visualization of the AAVhum.8 capsid by cryoelectron microscopy at 2.49-Å resolution localizes the newly acquired integrin recognition motif adjacent to the AAVR footprint. These observations underscore the new finding that distinct AAV surface epitopes can be evolved to exploit different cellular receptors for enhanced transduction. IMPORTANCE Understanding how viruses interact with host cells through cell surface receptors is central to discovery and development of antiviral therapeutics, vaccines, and gene transfer vectors. Here, we demonstrate that distinct epitopes on the surface of adeno-associated viruses can be evolved by infectious cycling to recognize different cell surface carbohydrates and glycoprotein receptors and solve the three-dimensional structure of one such newly evolved AAV capsid, which provides a roadmap for designing viruses with improved attributes for gene therapy applications.


  • Organizational Affiliation

    Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hillgrid.10698.36, Chapel Hill, North Carolina, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein518Adeno-associated virus - 8Mutation(s): 0 
UniProt
Find proteins for Q8JQF8 (Adeno-associated virus - 8)
Explore Q8JQF8 
Go to UniProtKB:  Q8JQF8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8JQF8
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
DA
Query on DA

Download Ideal Coordinates CCD File 
AC [auth S]
AD [auth s]
BC [auth T]
BD [auth t]
CC [auth U]
AC [auth S],
AD [auth s],
BC [auth T],
BD [auth t],
CC [auth U],
CD [auth u],
DC [auth V],
DD [auth v],
EC [auth W],
ED [auth w],
FC [auth X],
FD [auth x],
GC [auth Y],
GD [auth y],
HC [auth Z],
HD [auth z],
IB [auth A],
IC [auth a],
ID [auth 1],
JB [auth B],
JC [auth b],
JD [auth 2],
KB [auth C],
KC [auth c],
KD [auth 3],
LB [auth D],
LC [auth d],
LD [auth 4],
MB [auth E],
MC [auth e],
MD [auth 5],
NB [auth F],
NC [auth f],
ND [auth 6],
OB [auth G],
OC [auth g],
OD [auth 7],
PB [auth H],
PC [auth h],
PD [auth 8],
QB [auth I],
QC [auth i],
RB [auth J],
RC [auth j],
SB [auth K],
SC [auth k],
TB [auth L],
TC [auth l],
UB [auth M],
UC [auth m],
VB [auth N],
VC [auth n],
WB [auth O],
WC [auth o],
XB [auth P],
XC [auth p],
YB [auth Q],
YC [auth q],
ZB [auth R],
ZC [auth r]
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
C10 H14 N5 O6 P
KHWCHTKSEGGWEX-RRKCRQDMSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.49 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcisTEM

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM082946

Revision History  (Full details and data files)

  • Version 1.0: 2021-07-07
    Type: Initial release
  • Version 1.1: 2021-08-18
    Changes: Database references
  • Version 1.2: 2021-09-22
    Changes: Database references