7L98

Connecting hydrophobic surfaces in cyclic peptides increases membrane permeability


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

Connecting Hydrophobic Surfaces in Cyclic Peptides Increases Membrane Permeability.

Hoang, H.N.Hill, T.A.Fairlie, D.P.

(2021) Angew Chem Int Ed Engl 60: 8385-8390

  • DOI: https://doi.org/10.1002/anie.202012643
  • Primary Citation of Related Structures:  
    7L96, 7L98, 7L9D

  • PubMed Abstract: 

    N- or C-methylation in natural and synthetic cyclic peptides can increase membrane permeability, but it remains unclear why this happens in some cases but not others. Here we compare three-dimensional structures for cyclic peptides from six families, including isomers differing only in the location of an N- or Cα-methyl substituent. We show that a single methyl group only increases membrane permeability when it connects or expands hydrophobic surface patches. Positional isomers, with the same molecular weight, hydrogen bond donors/acceptors, rotatable bonds, calculated LogP, topological polar surface area, and total hydrophobic surface area, can have different membrane permeabilities that correlate with the size of the largest continuous hydrophobic surface patch. These results illuminate a key local molecular determinant of membrane permeability.


  • Organizational Affiliation

    Division of Chemistry and Structural Biology and ARC Centre of Excellence for Innovations in Peptide and Protein Science, Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cyclic peptide ALA-MEA-PRO-ILE-PRO-ITZ6Homo sapiensMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MEA
Query on MEA
A
L-PEPTIDE LINKINGC10 H13 N O2PHE
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 2021-09-08 
  • Deposition Author(s): Hoang, H.N.

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-08
    Type: Initial release
  • Version 2.0: 2023-11-15
    Changes: Atomic model, Author supporting evidence, Data collection, Database references, Derived calculations, Experimental preparation, Other, Source and taxonomy, Structure summary