7KZN

Outer dynein arm core subcomplex from C. reinhardtii


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of a microtubule-bound axonemal dynein.

Walton, T.Wu, H.Brown, A.

(2021) Nat Commun 12: 477-477

  • DOI: https://doi.org/10.1038/s41467-020-20735-7
  • Primary Citation of Related Structures:  
    7KZM, 7KZN, 7KZO

  • PubMed Abstract: 

    Axonemal dyneins are tethered to doublet microtubules inside cilia to drive ciliary beating, a process critical for cellular motility and extracellular fluid flow. Axonemal dyneins are evolutionarily and biochemically distinct from cytoplasmic dyneins that transport cargo, and the mechanisms regulating their localization and function are poorly understood. Here, we report a single-particle cryo-EM reconstruction of a three-headed axonemal dynein natively bound to doublet microtubules isolated from cilia. The slanted conformation of the axonemal dynein causes interaction of its motor domains with the neighboring dynein complex. Our structure shows how a heterotrimeric docking complex specifically localizes the linear array of axonemal dyneins to the doublet microtubule by directly interacting with the heavy chains. Our structural analysis establishes the arrangement of conserved heavy, intermediate and light chain subunits, and provides a framework to understand the roles of individual subunits and the interactions between dyneins during ciliary waveform generation.


  • Organizational Affiliation

    Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, 240 Longwood Avenue, Boston, MA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Heavy chain alpha4,503Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DV97 (Chlamydomonas reinhardtii)
Explore A0A2K3DV97 
Go to UniProtKB:  A0A2K3DV97
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DV97
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar outer dynein arm heavy chain beta4,568Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8J1M5 (Chlamydomonas reinhardtii)
Explore A8J1M5 
Go to UniProtKB:  A8J1M5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8J1M5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein gamma chain, flagellar outer arm4,485Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q39575 (Chlamydomonas reinhardtii)
Explore Q39575 
Go to UniProtKB:  Q39575
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ39575
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein, 78 kDa intermediate chain, flagellar outer arm683Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q39578 (Chlamydomonas reinhardtii)
Explore Q39578 
Go to UniProtKB:  Q39578
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ39578
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein, 70 kDa intermediate chain, flagellar outer arm567Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for P27766 (Chlamydomonas reinhardtii)
Explore P27766 
Go to UniProtKB:  P27766
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP27766
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar outer dynein arm light chain 2136Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for O04355 (Chlamydomonas reinhardtii)
Explore O04355 
Go to UniProtKB:  O04355
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO04355
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein 18 kDa light chain, flagellar outer arm159Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q39584 (Chlamydomonas reinhardtii)
Explore Q39584 
Go to UniProtKB:  Q39584
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ39584
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein 11 kDa light chain, flagellar outer arm120Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q39579 (Chlamydomonas reinhardtii)
Explore Q39579 
Go to UniProtKB:  Q39579
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ39579
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein light chain roadblock LC7a105Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q9SWQ6 (Chlamydomonas reinhardtii)
Explore Q9SWQ6 
Go to UniProtKB:  Q9SWQ6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9SWQ6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein light chain roadblock LC7b100Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IY95 (Chlamydomonas reinhardtii)
Explore A8IY95 
Go to UniProtKB:  A8IY95
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8IY95
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein 8 kDa light chain, flagellar outer arm
K, L, M, N
91Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q39580 (Chlamydomonas reinhardtii)
Explore Q39580 
Go to UniProtKB:  Q39580
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ39580
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein light chain 9117Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q2VIY5 (Chlamydomonas reinhardtii)
Explore Q2VIY5 
Go to UniProtKB:  Q2VIY5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2VIY5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein light chain 10103Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8J5C4 (Chlamydomonas reinhardtii)
Explore A8J5C4 
Go to UniProtKB:  A8J5C4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8J5C4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
DC1Q [auth X]121Chlamydomonas reinhardtiiMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
DC2R [auth Y]168Chlamydomonas reinhardtiiMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Outer dynein arm-docking complex protein DC3S [auth Z]184Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for Q7Y0H2 (Chlamydomonas reinhardtii)
Explore Q7Y0H2 
Go to UniProtKB:  Q7Y0H2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7Y0H2
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.18.2
RECONSTRUCTIONRELION3.1

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-01-20
    Type: Initial release
  • Version 1.1: 2021-02-03
    Changes: Database references
  • Version 1.2: 2024-03-06
    Changes: Data collection, Database references