7KFT

Partial Cas6-RT-Cas1--Cas2 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural coordination between active sites of a CRISPR reverse transcriptase-integrase complex.

Wang, J.Y.Hoel, C.M.Al-Shayeb, B.Banfield, J.F.Brohawn, S.G.Doudna, J.A.

(2021) Nat Commun 12: 2571-2571

  • DOI: https://doi.org/10.1038/s41467-021-22900-y
  • Primary Citation of Related Structures:  
    7KFT, 7KFU

  • PubMed Abstract: 

    CRISPR-Cas systems provide adaptive immunity in bacteria and archaea, beginning with integration of foreign sequences into the host CRISPR genomic locus and followed by transcription and maturation of CRISPR RNAs (crRNAs). In some CRISPR systems, a reverse transcriptase (RT) fusion to the Cas1 integrase and Cas6 maturase creates a single protein that enables concerted sequence integration and crRNA production. To elucidate how the RT-integrase organizes distinct enzymatic activities, we present the cryo-EM structure of a Cas6-RT-Cas1-Cas2 CRISPR integrase complex. The structure reveals a heterohexamer in which the RT directly contacts the integrase and maturase domains, suggesting functional coordination between all three active sites. Together with biochemical experiments, our data support a model of sequential enzymatic activities that enable CRISPR sequence acquisition from RNA and DNA substrates. These findings highlight an expanded capacity of some CRISPR systems to acquire diverse sequences that direct CRISPR-mediated interference.


  • Organizational Affiliation

    Department of Chemistry, University of California, Berkeley, Berkeley, CA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cas2A [auth B],
B [auth A]
99Thiomicrospira sp.Mutation(s): 0 
UniProt
Find proteins for A0A1J5ID92 (Thiomicrospira sp. CG2_30_44_34)
Explore A0A1J5ID92 
Go to UniProtKB:  A0A1J5ID92
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1J5ID92
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Cas6-RT-Cas1C [auth D],
D [auth C],
E
984Thiomicrospira sp.Mutation(s): 0 
UniProt
Find proteins for A0A1J5IBV5 (Thiomicrospira sp. CG2_30_44_34)
Explore A0A1J5IBV5 
Go to UniProtKB:  A0A1J5IBV5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1J5IBV5
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM123496

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-31
    Type: Initial release
  • Version 1.1: 2021-05-19
    Changes: Database references
  • Version 1.2: 2024-03-06
    Changes: Data collection, Database references