7FEJ

Complex of FMDV A/AF/72 and bovine neutralizing scFv antibody R55


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.91 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structures of Foot-and-Mouth Disease Virus with Bovine Neutralizing Antibodies Reveal the Determinant of Intraserotype Cross-Neutralization.

He, Y.Li, K.Wang, L.Sun, Z.Cao, Y.Li, P.Sun, P.Bao, H.Zhou, S.Wang, S.Bai, X.Liu, X.Zhao, L.Fan, X.Liu, Z.Lu, Z.Yang, C.Lou, Z.

(2021) J Virol 95: e0130821-e0130821

  • DOI: https://doi.org/10.1128/JVI.01308-21
  • Primary Citation of Related Structures:  
    7FEI, 7FEJ

  • PubMed Abstract: 

    Foot-and-mouth disease virus (FMDV) exhibits broad antigenic diversity with poor intraserotype cross-neutralizing activity. Studies of the determinant involved in this diversity are essential for the development of broadly protective vaccines. In this work, we isolated a bovine antibody, designated R55, that displays cross-reaction with both FMDV A/AF/72 (hereafter named FMDV-AAF) and FMDV A/WH/09 (hereafter named FMDV-AWH) but only has a neutralizing effect on FMDV-AWH. Near-atomic resolution structures of FMDV-AAF-R55 and FMDV-AWH-R55 show that R55 engages the capsids of both FMDV-AAF and FMDV-AWH near the icosahedral 3-fold axis and binds to the βB and BC/HI-loops of VP2 and to the B-B knob of VP3. The common interaction residues are highly conserved, which is the major determinant for cross-reaction with both FMDV-AAF and FMDV-AWH. In addition, the cryo-EM structure of the FMDV-AWH-R55 complex also shows that R55 binds to VP3 E70 located at the VP3 BC-loop in an adjacent pentamer, which enhances the acid and thermal stabilities of the viral capsid. This may prevent capsid dissociation and genome release into host cells, eventually leading to neutralization of the viral infection. In contrast, R55 binds only to the FMDV-AAF capsid within one pentamer due to the VP3 E70G variation, which neither enhances capsid stability nor neutralizes FMDV-AAF infection. The VP3 E70G mutation is the major determinant involved in the neutralizing differences between FMDV-AWH and FMDV-AAF. The crucial amino acid VP3 E70 is a key component of the neutralizing epitopes, which may aid in the development of broadly protective vaccines. IMPORTANCE Foot-and-mouth disease virus (FMDV) causes a highly contagious and economically devastating disease in cloven-hoofed animals, and neutralizing antibodies play critical roles in the defense against viral infections. Here, we isolated a bovine antibody (R55) using the single B cell antibody isolation technique. Enzyme-linked immunosorbent assays (ELISA) and virus neutralization tests (VNT) showed that R55 displays cross-reactions with both FMDV-AWH and FMDV-AAF but only has a neutralizing effect on FMDV-AWH. Cryo-EM structures, fluorescence-based thermal stability assays and acid stability assays showed that R55 engages the capsid of FMDV-AWH near the icosahedral 3-fold axis and informs an interpentamer epitope, which overstabilizes virions to hinder capsid dissociation to release the genome, eventually leading to neutralization of viral infection. The crucial amino acid VP3 E70 forms a key component of neutralizing epitopes, and the determination of the VP3 E70G mutation involved in the neutralizing differences between FMDV-AWH and FMDV-AAF could aid in the development of broadly protective vaccines.


  • Organizational Affiliation

    Drug Discovery Center for Infectious Disease, College of Pharmacy, Nankai Universitygrid.216938.7, Tianjin, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
A/AF/72 VP1A [auth 1]212Foot-and-mouth disease virusMutation(s): 0 
UniProt
Find proteins for A0A8F2F4D7 (Foot-and-mouth disease virus A)
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Go to UniProtKB:  A0A8F2F4D7
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UniProt GroupA0A8F2F4D7
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
A/AF/72 VP2B [auth 2]218Foot-and-mouth disease virusMutation(s): 0 
UniProt
Find proteins for A0A142ZCF3 (Foot-and-mouth disease virus A)
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UniProt GroupA0A142ZCF3
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
A/AF/72 VP3C [auth 3]221Foot-and-mouth disease virusMutation(s): 0 
UniProt
Find proteins for P49303 (Foot-and-mouth disease virus (isolate -/Azerbaijan/A22-550/1965 serotype A))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP0D [auth 4]85Foot-and-mouth disease virusMutation(s): 0 
EC: 2.7.7.48 (PDB Primary Data), 3.4.22.28 (PDB Primary Data), 3.4.22.46 (PDB Primary Data), 3.6.1.15 (PDB Primary Data)
UniProt
Find proteins for P03307 (Foot-and-mouth disease virus (isolate -/Germany/A5Westerwald/1951 serotype A))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
IG HEAVY CHAIN VARIABLE REGIONE [auth H]126Bos taurusMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
IG LAMDA CHAIN VARIABLE REGIONF [auth L]123Bos taurusMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.91 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-29
    Type: Initial release
  • Version 1.1: 2021-10-13
    Changes: Database references, Structure summary
  • Version 1.2: 2022-02-16
    Changes: Database references, Derived calculations