Dehydrogenase holoenzyme
Roh, S.H., Park, J.S.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Formate dehydrogenase | 995 | Methylorubrum extorquens AM1 | Mutation(s): 0  Gene Names: fdh1A, MexAM1_META1p5032 EC: 1.17.1.9 | ||
UniProt | |||||
Find proteins for C5ATT7 (Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1)) Explore C5ATT7  Go to UniProtKB:  C5ATT7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C5ATT7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tungsten-containing formate dehydrogenase beta subunit | 572 | Methylorubrum extorquens AM1 | Mutation(s): 0  Gene Names: fdh1B, MexAM1_META1p5031 EC: 1.2.1.2 | ||
UniProt | |||||
Find proteins for C5ATT6 (Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1)) Explore C5ATT6  Go to UniProtKB:  C5ATT6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C5ATT6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MGD Query on MGD | D [auth A], E [auth A] | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE C20 H26 N10 O13 P2 S2 VQAGYJCYOLHZDH-ILXWUORBSA-N | |||
FMN Query on FMN | J [auth B] | FLAVIN MONONUCLEOTIDE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N | |||
SF4 Query on SF4 | G [auth A], H [auth A], I [auth A], K [auth B] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N | |||
W Query on W | C [auth A] | TUNGSTEN ION W FZFRVZDLZISPFJ-UHFFFAOYSA-N | |||
FES Query on FES | F [auth A], L [auth B] | FE2/S2 (INORGANIC) CLUSTER Fe2 S2 NIXDOXVAJZFRNF-UHFFFAOYSA-N |
Task | Software Package | Version |
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RECONSTRUCTION | cryoSPARC | 2.15.0 |
MODEL REFINEMENT | PHENIX | 1.19.1 |
MODEL REFINEMENT | Coot | 0.8.9.2 |
Funding Organization | Location | Grant Number |
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National Research Foundation (NRF, Korea) | Korea, Republic Of | 2015M3D3A1A01064919 |