7D6N

Crystal structure of tick-borne encephalitis virus RNA-dependent RNA polymerase

PDB DOI: https://doi.org/10.2210/pdb7D6N/pdb

Classification: TRANSFERASE
Organism(s): Tick-borne encephalitis virus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-10-01 Released: 2020-12-23
Deposition Author(s): Yang, J., Jing, X., Gong, P.
Funding Organization(s): Ministry of Science and Technology (MoST, China)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.17 Å
R-Value Free: 0.233
R-Value Work: 0.195
R-Value Observed: 0.197

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of tick-borne encephalitis virus

Yang, J., Jing, X., Zhang, B., Zheng, Z., Gong, P.

(2020) Nucleic Acids Res

Macromolecule Content

Total Structure Weight: 737.17 kDa
Atom Count: 45,346
Modelled Residue Count: 5,858
Deposited Residue Count: 6,380
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tick-borne encephalitis virus RNA-dependent RNA polymerase	A B C [auth E] D E [auth C] A, B, C [auth E], D, E [auth C], F, G, H [auth J], I, J [auth H]	638	Tick-borne encephalitis virus	Mutation(s): 0 Gene Names: NS5 EC: 2.7.7.49
UniProt
Find proteins for K4P8A2 (Tick-borne encephalitis virus) Explore K4P8A2 Go to UniProtKB: K4P8A2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	K4P8A2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN (Subject of Investigation/LOI) Query on ZN Download Ideal Coordinates CCD File SDF format, chain AA [auth F] SDF format, chain CA [auth G] SDF format, chain DA [auth G] SDF format, chain FA [auth J] SDF format, chain GA [auth J] SDF format, chain IA [auth I] SDF format, chain JA [auth I] SDF format, chain K [auth A] SDF format, chain L [auth A] SDF format, chain LA [auth H] SDF format, chain MA [auth H] SDF format, chain N [auth B] SDF format, chain O [auth B] SDF format, chain Q [auth E] SDF format, chain R [auth E] SDF format, chain T [auth D] SDF format, chain U [auth D] SDF format, chain W [auth C] SDF format, chain X [auth C] SDF format, chain Z [auth F] MOL2 format, chain AA [auth F] MOL2 format, chain CA [auth G] MOL2 format, chain DA [auth G] MOL2 format, chain FA [auth J] MOL2 format, chain GA [auth J] MOL2 format, chain IA [auth I] MOL2 format, chain JA [auth I] MOL2 format, chain K [auth A] MOL2 format, chain L [auth A] MOL2 format, chain LA [auth H] MOL2 format, chain MA [auth H] MOL2 format, chain N [auth B] MOL2 format, chain O [auth B] MOL2 format, chain Q [auth E] MOL2 format, chain R [auth E] MOL2 format, chain T [auth D] MOL2 format, chain U [auth D] MOL2 format, chain W [auth C] MOL2 format, chain X [auth C] MOL2 format, chain Z [auth F]	AA [auth F] CA [auth G] DA [auth G] FA [auth J] GA [auth J] AA [auth F], CA [auth G], DA [auth G], FA [auth J], GA [auth J], IA [auth I], JA [auth I], K [auth A], L [auth A], LA [auth H], MA [auth H], N [auth B], O [auth B], Q [auth E], R [auth E], T [auth D], U [auth D], W [auth C], X [auth C], Z [auth F]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain AA [auth F] Focus chain CA [auth G] Focus chain DA [auth G] Focus chain FA [auth J] Focus chain GA [auth J] Focus chain IA [auth I] Focus chain JA [auth I] Focus chain K [auth A] Focus chain L [auth A] Focus chain LA [auth H] Focus chain MA [auth H] Focus chain N [auth B] Focus chain O [auth B] Focus chain Q [auth E] Focus chain R [auth E] Focus chain T [auth D] Focus chain U [auth D] Focus chain W [auth C] Focus chain X [auth C] Focus chain Z [auth F] Interactions & Density Focus chain AA [auth F] Focus chain CA [auth G] Focus chain DA [auth G] Focus chain FA [auth J] Focus chain GA [auth J] Focus chain IA [auth I] Focus chain JA [auth I] Focus chain K [auth A] Focus chain L [auth A] Focus chain LA [auth H] Focus chain MA [auth H] Focus chain N [auth B] Focus chain O [auth B] Focus chain Q [auth E] Focus chain R [auth E] Focus chain T [auth D] Focus chain U [auth D] Focus chain W [auth C] Focus chain X [auth C] Focus chain Z [auth F]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain BA [auth F] SDF format, chain EA [auth G] SDF format, chain HA [auth J] SDF format, chain KA [auth I] SDF format, chain M [auth A] SDF format, chain NA [auth H] SDF format, chain P [auth B] SDF format, chain S [auth E] SDF format, chain V [auth D] SDF format, chain Y [auth C] MOL2 format, chain BA [auth F] MOL2 format, chain EA [auth G] MOL2 format, chain HA [auth J] MOL2 format, chain KA [auth I] MOL2 format, chain M [auth A] MOL2 format, chain NA [auth H] MOL2 format, chain P [auth B] MOL2 format, chain S [auth E] MOL2 format, chain V [auth D] MOL2 format, chain Y [auth C]	BA [auth F] EA [auth G] HA [auth J] KA [auth I] M [auth A] BA [auth F], EA [auth G], HA [auth J], KA [auth I], M [auth A], NA [auth H], P [auth B], S [auth E], V [auth D], Y [auth C]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain BA [auth F] Focus chain EA [auth G] Focus chain HA [auth J] Focus chain KA [auth I] Focus chain M [auth A] Focus chain NA [auth H] Focus chain P [auth B] Focus chain S [auth E] Focus chain V [auth D] Focus chain Y [auth C] Interactions & Density Focus chain BA [auth F] Focus chain EA [auth G] Focus chain HA [auth J] Focus chain KA [auth I] Focus chain M [auth A] Focus chain NA [auth H] Focus chain P [auth B] Focus chain S [auth E] Focus chain V [auth D] Focus chain Y [auth C]