7CKC

Simplified Alpha-Carboxysome, T=4


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of a Minimal alpha-Carboxysome-Derived Shell and Its Utility in Enzyme Stabilization.

Tan, Y.Q.Ali, S.Xue, B.Teo, W.Z.Ling, L.H.Go, M.K.Lv, H.Robinson, R.C.Narita, A.Yew, W.S.

(2021) Biomacromolecules 22: 4095-4109

  • DOI: https://doi.org/10.1021/acs.biomac.1c00533
  • Primary Citation of Related Structures:  
    7CKB, 7CKC, 7DHQ

  • PubMed Abstract: 

    Bacterial microcompartments are proteinaceous shells that encase specialized metabolic processes in bacteria. Recent advances in simplification of these intricate shells have encouraged bioengineering efforts. Here, we construct minimal shells derived from the Halothiobacillus neapolitanus α-carboxysome, which we term Cso-shell. Using cryogenic electron microscopy, the atomic-level structures of two shell forms were obtained, reinforcing notions of evolutionarily conserved features in bacterial microcompartment shell architecture. Encapsulation peptide sequences that facilitate loading of heterologous protein cargo within the shells were identified. We further provide a first demonstration in utilizing minimal bacterial microcompartment-derived shells for hosting heterologous enzymes. Cso-shells were found to stabilize enzymatic activities against heat shock, presence of methanol co-solvent, consecutive freeze-thawing, and alkaline environments. This study yields insights into α-carboxysome assembly and advances the utility of synthetic bacterial microcompartments as nanoreactors capable of stabilizing enzymes with varied properties and reaction chemistries.


  • Organizational Affiliation

    Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore (NUS), 8 Medical Drive, Singapore 117597.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Unidentified carboxysome polypeptide94Halothiobacillus neapolitanusMutation(s): 0 
UniProt
Find proteins for O85043 (Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
Explore O85043 
Go to UniProtKB:  O85043
Entity Groups  
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UniProt GroupO85043
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Major carboxysome shell protein 1A
AA [auth CG],
AC [auth CT],
AE [auth Ch],
AG [auth Cv],
AI [auth C8],
B [auth BA],
BA [auth DG],
BB [auth BN],
BC [auth DT],
BD [auth Bb],
BE [auth Dh],
BF [auth Bo],
BG [auth Dv],
BH [auth B2],
BI [auth D8],
C [auth CA],
CB [auth CN],
CD [auth Cb],
CF [auth Co],
CH [auth C2],
D [auth DA],
DA [auth BH],
DB [auth DN],
DC [auth BV],
DD [auth Db],
DE [auth Bi],
DF [auth Do],
DG [auth Bw],
DH [auth D2],
DI [auth B9],
EA [auth CH],
EC [auth CV],
EE [auth Ci],
EG [auth Cw],
EI [auth C9],
F [auth BB],
FA [auth DH],
FB [auth BO],
FC [auth DV],
FD [auth Bc],
FE [auth Di],
FF [auth Bp],
FG [auth Dw],
FH [auth B3],
FI [auth D9],
G [auth CB],
GB [auth CO],
GD [auth Cc],
GF [auth Cp],
GH [auth C3],
H [auth DB],
HA [auth BI],
HB [auth DO],
HC [auth BW],
HD [auth Dc],
HE [auth Bj],
HF [auth Dp],
HG [auth Bx],
HH [auth D3],
IA [auth CI],
IC [auth CW],
IE [auth Cj],
IG [auth Cx],
J [auth BC],
JA [auth DI],
JB [auth BP],
JC [auth DW],
JD [auth Bd],
JE [auth Dj],
JF [auth Bq],
JG [auth Dx],
JH [auth B4],
K [auth CC],
KB [auth CP],
KD [auth Cd],
KF [auth Cq],
KH [auth C4],
L [auth DC],
LA [auth BJ],
LB [auth DP],
LC [auth BX],
LD [auth Dd],
LE [auth Bk],
LF [auth Dq],
LG [auth By],
LH [auth D4],
MA [auth CJ],
MC [auth CX],
ME [auth Ck],
MG [auth Cy],
N [auth BD],
NA [auth DJ],
NB [auth BQ],
NC [auth DX],
ND [auth Be],
NE [auth Dk],
NF [auth Br],
NG [auth Dy],
NH [auth B5],
O [auth CD],
OB [auth CQ],
OD [auth Ce],
OF [auth Cr],
OH [auth C5],
P [auth DD],
PA [auth BK],
PB [auth DQ],
PC [auth BY],
PD [auth De],
PE [auth Bl],
PF [auth Dr],
PG [auth Bz],
PH [auth D5],
QA [auth CK],
QC [auth CY],
QE [auth Cl],
QG [auth Cz],
R [auth BE],
RA [auth DK],
RB [auth BR],
RC [auth DY],
RD [auth Bf],
RE [auth Dl],
RF [auth Bs],
RG [auth Dz],
RH [auth B6],
S [auth CE],
SB [auth CR],
SD [auth Cf],
SF [auth Cs],
SH [auth C6],
T [auth DE],
TA [auth BL],
TB [auth DR],
TC [auth BZ],
TD [auth Df],
TE [auth Bm],
TF [auth Ds],
TG [auth B0],
TH [auth D6],
UA [auth CL],
UC [auth CZ],
UE [auth Cm],
UG [auth C0],
V [auth BF],
VA [auth DL],
VB [auth BS],
VC [auth DZ],
VD [auth Bg],
VE [auth Dm],
VF [auth Bt],
VG [auth D0],
VH [auth B7],
W [auth CF],
WB [auth CS],
WD [auth Cg],
WF [auth Ct],
WH [auth C7],
X [auth DF],
XA [auth BM],
XB [auth DS],
XC [auth Ba],
XD [auth Dg],
XE [auth Bn],
XF [auth Dt],
XG [auth B1],
XH [auth D7],
YA [auth CM],
YC [auth Ca],
YE [auth Cn],
YG [auth C1],
Z [auth BG],
ZA [auth DM],
ZB [auth BT],
ZC [auth Da],
ZD [auth Bh],
ZE [auth Dn],
ZF [auth Bv],
ZG [auth D1],
ZH [auth B8]
98Halothiobacillus neapolitanus c2Mutation(s): 0 
Gene Names: csoS1AHneap_0915
UniProt
Find proteins for P45689 (Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
Explore P45689 
Go to UniProtKB:  P45689
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP45689
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0.7
MODEL REFINEMENTPHENIX1.18.2-3874

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Singapore)Singapore--

Revision History  (Full details and data files)

  • Version 1.0: 2021-08-25
    Type: Initial release
  • Version 1.1: 2022-02-16
    Changes: Database references