7CKB

Simplified Alpha-Carboxysome, T=3


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.24 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of a Minimal alpha-Carboxysome-Derived Shell and Its Utility in Enzyme Stabilization.

Tan, Y.Q.Ali, S.Xue, B.Teo, W.Z.Ling, L.H.Go, M.K.Lv, H.Robinson, R.C.Narita, A.Yew, W.S.

(2021) Biomacromolecules 22: 4095-4109

  • DOI: https://doi.org/10.1021/acs.biomac.1c00533
  • Primary Citation of Related Structures:  
    7CKB, 7CKC, 7DHQ

  • PubMed Abstract: 

    Bacterial microcompartments are proteinaceous shells that encase specialized metabolic processes in bacteria. Recent advances in simplification of these intricate shells have encouraged bioengineering efforts. Here, we construct minimal shells derived from the Halothiobacillus neapolitanus α-carboxysome, which we term Cso-shell. Using cryogenic electron microscopy, the atomic-level structures of two shell forms were obtained, reinforcing notions of evolutionarily conserved features in bacterial microcompartment shell architecture. Encapsulation peptide sequences that facilitate loading of heterologous protein cargo within the shells were identified. We further provide a first demonstration in utilizing minimal bacterial microcompartment-derived shells for hosting heterologous enzymes. Cso-shells were found to stabilize enzymatic activities against heat shock, presence of methanol co-solvent, consecutive freeze-thawing, and alkaline environments. This study yields insights into α-carboxysome assembly and advances the utility of synthetic bacterial microcompartments as nanoreactors capable of stabilizing enzymes with varied properties and reaction chemistries.


  • Organizational Affiliation

    Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore (NUS), 8 Medical Drive, Singapore 117597.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Unidentified carboxysome polypeptide94Halothiobacillus neapolitanusMutation(s): 0 
UniProt
Find proteins for O85043 (Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
Explore O85043 
Go to UniProtKB:  O85043
Entity Groups  
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UniProt GroupO85043
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Major carboxysome shell protein 1A
AA [auth CI],
AB [auth BR],
AD [auth Cj],
AE [auth Bs],
B [auth BA],
BB [auth CR],
BC [auth Bb],
BE [auth Cs],
BF [auth B2],
C [auth CA],
CA [auth BJ],
CC [auth Cb],
CD [auth Bk],
CF [auth C2],
DA [auth CJ],
DB [auth BS],
DD [auth Ck],
DE [auth Bt],
E [auth BB],
EB [auth CS],
EC [auth Bc],
EE [auth Ct],
EF [auth B3],
F [auth CB],
FA [auth BK],
FC [auth Cc],
FD [auth Bl],
FF [auth C3],
GA [auth CK],
GB [auth BT],
GD [auth Cl],
GE [auth Bv],
H [auth BC],
HB [auth CT],
HC [auth Bd],
HE [auth Cv],
HF [auth B4],
I [auth CC],
IA [auth BL],
IC [auth Cd],
ID [auth Bm],
IF [auth C4],
JA [auth CL],
JB [auth BV],
JD [auth Cm],
JE [auth Bw],
K [auth BD],
KB [auth CV],
KC [auth Be],
KE [auth Cw],
KF [auth B5],
L [auth CD],
LA [auth BM],
LC [auth Ce],
LD [auth Bn],
LF [auth C5],
MA [auth CM],
MB [auth BW],
MD [auth Cn],
ME [auth Bx],
N [auth BE],
NB [auth CW],
NC [auth Bf],
NE [auth Cx],
NF [auth B6],
O [auth CE],
OA [auth BN],
OC [auth Cf],
OD [auth Bo],
OF [auth C6],
PA [auth CN],
PB [auth BX],
PD [auth Co],
PE [auth By],
Q [auth BF],
QB [auth CX],
QC [auth Bg],
QE [auth Cy],
QF [auth B7],
R [auth CF],
RA [auth BO],
RC [auth Cg],
RD [auth Bp],
RF [auth C7],
SA [auth CO],
SB [auth BY],
SD [auth Cp],
SE [auth Bz],
T [auth BG],
TB [auth CY],
TC [auth Bh],
TE [auth Cz],
TF [auth B8],
U [auth CG],
UA [auth BP],
UC [auth Ch],
UD [auth Bq],
UF [auth C8],
VA [auth CP],
VB [auth BZ],
VD [auth Cq],
VE [auth B0],
W [auth BH],
WB [auth CZ],
WC [auth Bi],
WE [auth C0],
WF [auth B9],
X [auth CH],
XA [auth BQ],
XC [auth Ci],
XD [auth Br],
XF [auth C9],
YA [auth CQ],
YB [auth Ba],
YD [auth Cr],
YE [auth B1],
Z [auth BI],
ZB [auth Ca],
ZC [auth Bj],
ZE [auth C1]
98Halothiobacillus neapolitanus c2Mutation(s): 0 
Gene Names: csoS1AHneap_0915
UniProt
Find proteins for P45689 (Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
Explore P45689 
Go to UniProtKB:  P45689
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP45689
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.24 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0.7
MODEL REFINEMENTPHENIX1.18.2-3874

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Singapore)Singapore--

Revision History  (Full details and data files)

  • Version 1.0: 2021-08-25
    Type: Initial release
  • Version 1.1: 2022-02-16
    Changes: Database references