7CFZ

SH3 domain of NADPH oxidase activator 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.230 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural modification of NADPH oxidase activator (Noxa 1) by oxidative stress: An experimental and computational study.

Attri, P.Park, J.H.De Backer, J.Kim, M.Yun, J.H.Heo, Y.Dewilde, S.Shiratani, M.Choi, E.H.Lee, W.Bogaerts, A.

(2020) Int J Biol Macromol 163: 2405-2414

  • DOI: https://doi.org/10.1016/j.ijbiomac.2020.09.120
  • Primary Citation of Related Structures:  
    7CFZ

  • PubMed Abstract: 

    NADPH oxidases 1 (NOX1) derived reactive oxygen species (ROS) play an important role in the progression of cancer through signaling pathways. Therefore, in this paper, we demonstrate the effect of cold atmospheric plasma (CAP) on the structural changes of Noxa1 SH3 protein, one of the regulatory subunits of NOX1. For this purpose, firstly we purified the Noxa1 SH3 protein and analyzed the structure using X-ray crystallography, and subsequently, we treated the protein with two types of CAP reactors such as pulsed dielectric barrier discharge (DBD) and Soft Jet for different time intervals. The structural deformation of Noxa1 SH3 protein was analyzed by various experimental methods (circular dichroism, fluorescence, and NMR spectroscopy) and by MD simulations. Additionally, we demonstrate the effect of CAP (DBD and Soft Jet) on the viability and expression of NOX1 in A375 cancer cells. Our results are useful to understand the structural modification/oxidation occur in protein due to reactive oxygen and nitrogen (RONS) species generated by CAP.


  • Organizational Affiliation

    Center of Plasma Nano-interface Engineering, Kyushu University, Fukuoka, Japan; Research group PLASMANT, Department of Chemistry, University of Antwerp, Belgium. Electronic address: chem.pankaj@gmail.com.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NADPH oxidase activator 1
A, B
65Homo sapiensMutation(s): 0 
Gene Names: NOXA1P51NOX
UniProt & NIH Common Fund Data Resources
Find proteins for Q86UR1 (Homo sapiens)
Explore Q86UR1 
Go to UniProtKB:  Q86UR1
PHAROS:  Q86UR1
GTEx:  ENSG00000188747 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ86UR1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.230 
  • Space Group: P 2 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 30.596α = 90
b = 49.014β = 90
c = 72.868γ = 90
Software Package:
Software NamePurpose
HKL-2000data scaling
PHASERphasing
Cootmodel building
PHENIXrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-07-07
    Type: Initial release
  • Version 1.1: 2022-01-19
    Changes: Database references
  • Version 1.2: 2023-11-29
    Changes: Data collection, Refinement description