7CAG

Mycobacterium smegmatis LpqY-SugABC complex in the catalytic intermediate state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.78 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of trehalose recycling by the ABC transporter LpqY-SugABC.

Liu, F.Liang, J.Zhang, B.Gao, Y.Yang, X.Hu, T.Yang, H.Xu, W.Guddat, L.W.Rao, Z.

(2020) Sci Adv 6

  • DOI: https://doi.org/10.1126/sciadv.abb9833
  • Primary Citation of Related Structures:  
    7CAD, 7CAE, 7CAF, 7CAG

  • PubMed Abstract: 

    In bacteria, adenosine 5'-triphosphate (ATP)-binding cassette (ABC) importers are essential for the uptake of nutrients including the nonreducing disaccharide trehalose, a metabolite that is crucial for the survival and virulence of several human pathogens including Mycobacterium tuberculosis SugABC is an ABC transporter that translocates trehalose from the periplasmic lipoprotein LpqY into the cytoplasm of mycobacteria. Here, we report four high-resolution cryo-electron microscopy structures of the mycobacterial LpqY-SugABC complex to reveal how it binds and passes trehalose through the membrane to the cytoplasm. A unique feature observed in this system is the initial mode of capture of the trehalose at the LpqY interface. Uptake is achieved by a pivotal rotation of LpqY relative to SugABC, moving from an open and accessible conformation to a clamped conformation upon trehalose binding. These findings enrich our understanding as to how ABC transporters facilitate substrate transport across the membrane in Gram-positive bacteria.


  • Organizational Affiliation

    Shanghai Institute for Advanced Immunochemical Studies and School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Bacterial extracellular solute-binding proteinA [auth E]465Mycolicibacterium smegmatis MC2 155Mutation(s): 0 
Gene Names: MSMEG_5061
Membrane Entity: Yes 
UniProt
Find proteins for A0R2C3 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0R2C3 
Go to UniProtKB:  A0R2C3
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UniProt GroupA0R2C3
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ABC sugar transporter, permease componentB [auth A]305Mycolicibacterium smegmatis MC2 155Mutation(s): 0 
Gene Names: sugAMSMEI_4933
Membrane Entity: Yes 
UniProt
Find proteins for A0R2C2 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Go to UniProtKB:  A0R2C2
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UniProt GroupA0R2C2
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ABC transporter, permease protein SugBC [auth B]278Mycolicibacterium smegmatis MC2 155Mutation(s): 0 
Gene Names: MSMEG_5059
Membrane Entity: Yes 
UniProt
Find proteins for A0R2C1 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Go to UniProtKB:  A0R2C1
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UniProt GroupA0R2C1
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
ABC transporter, ATP-binding protein SugCD [auth C],
E [auth D]
406Mycolicibacterium smegmatis MC2 155Mutation(s): 1 
Gene Names: MSMEG_5058
UniProt
Find proteins for A0R2C0 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0R2C0 
Go to UniProtKB:  A0R2C0
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UniProt GroupA0R2C0
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 5
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranoseF [auth H]2N/A
Glycosylation Resources
GlyTouCan:  G92130SN
GlyCosmos:  G92130SN
Biologically Interesting Molecules (External Reference) 1 Unique
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.78 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2017YFC0840300
National Natural Science Foundation of China (NSFC)China81520108019

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-02
    Type: Initial release
  • Version 1.1: 2024-03-27
    Changes: Data collection, Database references