Download MendeleyCrystal structure of the N-terminal domain of human MdmX protein in complex with Nutlin3a
Su, Z.D., Cheng, X.Y., Zhang, B.L., Kuang, Z.K., Yang, J., Li, Z.C., Yu, J.P., Cao, C.Z., Zhao, Z.T.To be published.
7C3Y
Crystal structure of the N-terminal domain of human MdmX protein in complex with Nutlin3a
- PDB DOI: https://doi.org/10.2210/pdb7C3Y/pdb
- Classification: ONCOPROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli K-12
- Mutation(s): No
- Deposited: 2020-05-14 Released: 2020-06-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.63 Å
- R-Value Free: 0.227
- R-Value Work: 0.200
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein Mdm4 | 96 | Homo sapiens | Mutation(s): 0 Gene Names: MDM4, MDMX |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O15151 (Homo sapiens) Explore O15151 Go to UniProtKB: O15151 | |||||
PHAROS: O15151 GTEx: ENSG00000198625 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O15151 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NUT (Subject of Investigation/LOI) Query on NUT | C [auth A] | 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one C30 H30 Cl2 N4 O4 BDUHCSBCVGXTJM-WUFINQPMSA-N |  | ||
| O4B Query on O4B | B [auth A] | 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE C12 H24 O6 XEZNGIUYQVAUSS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.63 Å
- R-Value Free: 0.227
- R-Value Work: 0.200
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 47.552 | α = 90 |
| b = 47.552 | β = 90 |
| c = 90.676 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2020-06-17 Deposition Author(s): Su, Z.D., Cheng, X.Y., Zhang, B.L., Kuang, Z.K., Yang, J., Li, Z.C., Yu, J.P., Zhao, Z.T., Cao, C.Z.
Revision History (Full details and data files)
- Version 1.0: 2020-06-17
Type: Initial release - Version 1.1: 2023-11-29
Changes: Data collection, Database references, Derived calculations, Refinement description
