7ASA

Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural Basis for Bacterial Ribosome-Associated Quality Control by RqcH and RqcP.

Crowe-McAuliffe, C.Takada, H.Murina, V.Polte, C.Kasvandik, S.Tenson, T.Ignatova, Z.Atkinson, G.C.Wilson, D.N.Hauryliuk, V.

(2021) Mol Cell 81: 115

  • DOI: https://doi.org/10.1016/j.molcel.2020.11.002
  • Primary Citation of Related Structures:  
    7AS8, 7AS9, 7ASA

  • PubMed Abstract: 

    In all branches of life, stalled translation intermediates are recognized and processed by ribosome-associated quality control (RQC) pathways. RQC begins with the splitting of stalled ribosomes, leaving an unfinished polypeptide still attached to the large subunit. Ancient and conserved NEMF family RQC proteins target these incomplete proteins for degradation by the addition of C-terminal "tails." How such tailing can occur without the regular suite of translational components is, however, unclear. Using single-particle cryo-electron microscopy (EM) of native complexes, we show that C-terminal tailing in Bacillus subtilis is mediated by NEMF protein RqcH in concert with RqcP, an Hsp15 family protein. Our structures reveal how these factors mediate tRNA movement across the ribosomal 50S subunit to synthesize polypeptides in the absence of mRNA or the small subunit.


  • Organizational Affiliation

    Institute for Biochemistry and Molecular Biology, University of Hamburg, Martin-Luther-King-Pl. 6, 20146 Hamburg, Germany.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Rqc2 homolog RqcHA [auth 0]597Bacillus subtilis subsp. subtilis str. 168Mutation(s): 0 
Gene Names: rqcHyloABSU15640
UniProt
Find proteins for O34693 (Bacillus subtilis (strain 168))
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Go to UniProtKB:  O34693
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UniProt GroupO34693
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein YabOB [auth 1]86Bacillus subtilis subsp. subtilis str. 168Mutation(s): 0 
UniProt
Find proteins for P37557 (Bacillus subtilis (strain 168))
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Go to UniProtKB:  P37557
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UniProt GroupP37557
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L11E [auth K]141Bacillus subtilis subsp. subtilis str. 168Mutation(s): 0 
UniProt
Find proteins for Q06796 (Bacillus subtilis (strain 168))
Explore Q06796 
Go to UniProtKB:  Q06796
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UniProt GroupQ06796
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Entity ID: 3
MoleculeChains LengthOrganismImage
tRNA-Ala-1-1C [auth 2]76Bacillus subtilis subsp. subtilis str. 168
Sequence Annotations
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Entity ID: 4
MoleculeChains LengthOrganismImage
23S rRNAD [auth A]2,926Bacillus subtilis subsp. subtilis str. 168
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyWI3285/8-1
German Research Foundation (DFG)GermanySPP-1879
Swedish Research CouncilSweden2017-03783
Swedish Research CouncilSweden2019-01085
Swedish Research CouncilSweden2018-00956

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-23
    Type: Initial release
  • Version 1.1: 2020-12-30
    Changes: Database references
  • Version 1.2: 2021-01-20
    Changes: Database references