7AL3

Native-like genome-containing particle of DWV in acidic pH


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Capsid opening enables genome release of iflaviruses.

Skubnik, K.Sukenik, L.Buchta, D.Fuzik, T.Prochazkova, M.Moravcova, J.Smerdova, L.Pridal, A.Vacha, R.Plevka, P.

(2021) Sci Adv 7

  • DOI: https://doi.org/10.1126/sciadv.abd7130
  • Primary Citation of Related Structures:  
    7AL3

  • PubMed Abstract: 

    The family Iflaviridae includes economically important viruses of the western honeybee such as deformed wing virus, slow bee paralysis virus, and sacbrood virus. Iflaviruses have nonenveloped virions and capsids organized with icosahedral symmetry. The genome release of iflaviruses can be induced in vitro by exposure to acidic pH, implying that they enter cells by endocytosis. Genome release intermediates of iflaviruses have not been structurally characterized. Here, we show that conformational changes and expansion of iflavirus RNA genomes, which are induced by acidic pH, trigger the opening of iflavirus particles. Capsids of slow bee paralysis virus and sacbrood virus crack into pieces. In contrast, capsids of deformed wing virus are more flexible and open like flowers to release their genomes. The large openings in iflavirus particles enable the fast exit of genomes from capsids, which decreases the probability of genome degradation by the RNases present in endosomes.


  • Organizational Affiliation

    Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00 Brno, Czech Republic.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Genome polyprotein258Deformed wing virusMutation(s): 0 
UniProt
Find proteins for L0CTV4 (Deformed wing virus)
Explore L0CTV4 
Go to UniProtKB:  L0CTV4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupL0CTV4
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Genome polyprotein253Deformed wing virusMutation(s): 0 
UniProt
Find proteins for E0YTW0 (Deformed wing virus)
Explore E0YTW0 
Go to UniProtKB:  E0YTW0
Entity Groups  
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UniProt GroupE0YTW0
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Genome polyprotein416Deformed wing virusMutation(s): 0 
UniProt
Find proteins for Q7TG18 (Deformed wing virus)
Explore Q7TG18 
Go to UniProtKB:  Q7TG18
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7TG18
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Grant Agency of the Czech RepublicCzech RepublicGX19-25982X

Revision History  (Full details and data files)

  • Version 1.0: 2021-02-10
    Type: Initial release