7AJT

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

PDB DOI: https://doi.org/10.2210/pdb7AJT/pdb
NAKB: 7AJT
EM Map EMD-11807: EMDB EMDataResource

Classification: RIBOSOME
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Saccharomyces cerevisiae S288C
Mutation(s): No

Deposited: 2020-09-29 Released: 2020-12-30
Deposition Author(s): Cheng, J., Lau, B., Flemming, D., Venuta, G.L., Berninghausen, O., Beckmann, R., Hurt, E.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.60 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of the Maturing 90S Pre-ribosome in Association with the RNA Exosome.

Lau, B., Cheng, J., Flemming, D., La Venuta, G., Berninghausen, O., Beckmann, R., Hurt, E.

(2021) Mol Cell 81: 293

PubMed: 33326748 Search on PubMed
DOI: https://doi.org/10.1016/j.molcel.2020.11.009
Primary Citation of Related Structures:
7AJT, 7AJU

PubMed Abstract:
Ribosome assembly is catalyzed by numerous trans-acting factors and coupled with irreversible pre-rRNA processing, driving the pathway toward mature ribosomal subunits. One decisive step early in this progression is removal of the 5' external transcribed spacer (5'-ETS), an RNA extension at the 18S rRNA that is integrated into the huge 90S pre-ribosome structure. Upon endo-nucleolytic cleavage at an internal site, A ₁, the 5'-ETS is separated from the 18S rRNA and degraded. Here we present biochemical and cryo-electron microscopy analyses that depict the RNA exosome, a major 3'-5' exoribonuclease complex, in a super-complex with the 90S pre-ribosome. The exosome is docked to the 90S through its co-factor Mtr4 helicase, a processive RNA duplex-dismantling helicase, which strategically positions the exosome at the base of 5'-ETS helices H9-H9', which are dislodged in our 90S-exosome structures. These findings suggest a direct role of the exosome in structural remodeling of the 90S pre-ribosome to drive eukaryotic ribosome synthesis.

Organizational Affiliation

Heidelberg University Biochemistry Center (BZH), Im Neuenheimer Feld 328, 69120 Heidelberg, Germany.

Macromolecule Content

Total Structure Weight: 5,393.94 kDa
Atom Count: 256,149
Modelled Residue Count: 31,265
Deposited Residue Count: 42,316
Unique protein chains: 75
Unique nucleic acid chains: 4

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
rRNA 2'-O-methyltransferase fibrillarin	A [auth CA], E [auth CB]	327	Saccharomyces cerevisiae S288C	Mutation(s): 0 EC: 2.1.1
UniProt
Find proteins for P15646 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P15646 Go to UniProtKB: P15646
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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S1-A	B [auth DA]	255	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA cytidine acetyltransferase	C [auth JA], F [auth JB]	1,056	Saccharomyces cerevisiae S288C	Mutation(s): 0 EC: 2.3.1
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UniProt Group	P53914
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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Periodic tryptophan protein 2	D [auth UA]	923	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleolar complex protein 14	G [auth UB]	810	Saccharomyces cerevisiae S288C	Mutation(s): 0
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Find proteins for Q99207 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q99207 Go to UniProtKB: Q99207
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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Something about silencing protein 10	H [auth UC]	610	Saccharomyces cerevisiae S288C	Mutation(s): 0
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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 4	I [auth UD]	776	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q06679
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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 5	J [auth UE]	643	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q04177
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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 6	K [auth UF]	440	Saccharomyces cerevisiae S288C	Mutation(s): 0
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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 7	L [auth UG]	554	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	P40055
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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 8	M [auth UH]	713	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	P53276
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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 9	N [auth UI]	575	Saccharomyces cerevisiae S288C	Mutation(s): 0
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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 10	O [auth UJ]	1,769	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	P42945
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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 11	P [auth UK]	250	Saccharomyces cerevisiae S288C	Mutation(s): 0
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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 12	Q [auth UL]	943	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q12220
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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 13	R [auth UM]	817	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q05946
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Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 14	S [auth UN]	899	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q04500
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Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 15	T [auth UO]	513	Saccharomyces cerevisiae S288C	Mutation(s): 0
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Find proteins for Q04305 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q04305 Go to UniProtKB: Q04305
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UniProt Group	Q04305
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Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
Bud site selection protein 21	U [auth UP]	214	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q08492
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Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
NET1-associated nuclear protein 1	V [auth UQ]	896	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q02931
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Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 18	W [auth UR]	594	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	P40362
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Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleolar complex protein 4	X [auth US]	552	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q06512
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Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 20	Y [auth UT]	2,493	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	P35194
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Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 21	Z [auth UU]	939	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q06078
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Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein 22	AA [auth UV]	1,237	Saccharomyces cerevisiae S288C	Mutation(s): 0
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Find proteins for P53254 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53254 Go to UniProtKB: P53254
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UniProt Group	P53254
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Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
rRNA-processing protein FCF1	BA [auth UX]	189	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q05498
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Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosome biogenesis protein UTP30	CA [auth UZ]	274	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	P36144
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Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleolar protein 56	DA [auth CD]	504	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q12460
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Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleolar protein 58	EA [auth CE]	511	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q12499
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Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
13 kDa ribonucleoprotein-associated protein	FA [auth CF], GA [auth CG]	126	Saccharomyces cerevisiae S288C	Mutation(s): 0
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Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal RNA-processing protein 9	HA [auth CH]	573	Saccharomyces cerevisiae S288C	Mutation(s): 0
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Find proteins for Q06506 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q06506 Go to UniProtKB: Q06506
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UniProt Group	Q06506
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Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar ribonucleoprotein protein IMP3	IA [auth CI]	183	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	P32899
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Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar ribonucleoprotein protein IMP4	JA [auth CJ]	290	Saccharomyces cerevisiae S288C	Mutation(s): 0
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Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
U3 small nucleolar RNA-associated protein MPP10	KA [auth CK]	593	Saccharomyces cerevisiae S288C	Mutation(s): 0
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Find proteins for P47083 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P47083 Go to UniProtKB: P47083
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UniProt Group	P47083
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Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosome biogenesis protein BMS1	LA [auth CL]	1,183	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q08965
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Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA 3'-terminal phosphate cyclase-like protein	MA [auth CM]	367	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q08096
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Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal RNA-processing protein 7	NA [auth CN]	297	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	P25368
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Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosome biogenesis protein ENP2	OA [auth JC]	707	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	P48234
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Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal RNA small subunit methyltransferase NEP1	PA [auth JF], QA [auth JG]	252	Saccharomyces cerevisiae S288C	Mutation(s): 0 EC: 2.1.1.260
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Find proteins for Q06287 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q06287 Go to UniProtKB: Q06287
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UniProt Group	Q06287
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Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
Essential nuclear protein 1	RA [auth JH]	483	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	P38333
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Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
rRNA biogenesis protein RRP5	SA [auth JI]	1,729	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q05022
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Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
Pre-rRNA-processing protein PNO1	TA [auth JJ]	274	Saccharomyces cerevisiae S288C	Mutation(s): 0
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Find proteins for Q99216 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q99216 Go to UniProtKB: Q99216
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Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein BFR2	UA [auth JK]	534	Saccharomyces cerevisiae S288C	Mutation(s): 0
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Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
rRNA-processing protein FCF2	VA [auth JM]	217	Saccharomyces cerevisiae S288C	Mutation(s): 0
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UniProt Group	Q12035
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Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein FAF1	WA [auth JN]	346	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P40546 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40546 Go to UniProtKB: P40546
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UniProt Group	P40546
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Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
KRR1 small subunit processome component	XA [auth JO]	316	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P25586 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P25586 Go to UniProtKB: P25586
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UniProt Group	P25586
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Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein SOF1	YA [auth JP]	489	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P33750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P33750 Go to UniProtKB: P33750
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Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
Regulator of rDNA transcription protein 14	ZA [auth JQ]	206	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P40470 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40470 Go to UniProtKB: P40470
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UniProt Group	P40470
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Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S4-A	AB [auth DE]	261	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX35 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX35 Go to UniProtKB: P0CX35
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UniProt Group	P0CX35
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Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S5	BB [auth DF]	225	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P26783 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26783 Go to UniProtKB: P26783
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UniProt Group	P26783
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Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S6-A	CB [auth DG]	236	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX37 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX37 Go to UniProtKB: P0CX37
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UniProt Group	P0CX37
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Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S7-A	DB [auth DH]	190	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P26786 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26786 Go to UniProtKB: P26786
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UniProt Group	P26786
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Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S8-A	EB [auth DI]	200	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX39 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX39 Go to UniProtKB: P0CX39
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UniProt Group	P0CX39
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Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S9-A	FB [auth DJ]	197	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for O13516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore O13516 Go to UniProtKB: O13516
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UniProt Group	O13516
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Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S11-A	GB [auth DL]	156	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX47 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX47 Go to UniProtKB: P0CX47
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UniProt Group	P0CX47
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Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S13	HB [auth DN]	151	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05756 Go to UniProtKB: P05756
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UniProt Group	P05756
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Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S14-A	IB [auth DO]	137	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P06367 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P06367 Go to UniProtKB: P06367
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UniProt Group	P06367
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Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S16-A	JB [auth DQ]	143	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX51 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX51 Go to UniProtKB: P0CX51
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UniProt Group	P0CX51
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Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S18-A	KB [auth DS]	146	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX55 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX55 Go to UniProtKB: P0CX55
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UniProt Group	P0CX55
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Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S22-A	LB [auth DW]	130	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0C0W1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C0W1 Go to UniProtKB: P0C0W1
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UniProt Group	P0C0W1
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Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S23-A	MB [auth DX]	145	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX29 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX29 Go to UniProtKB: P0CX29
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UniProt Group	P0CX29
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Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S24-A	NB [auth DY]	135	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P0CX31 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CX31 Go to UniProtKB: P0CX31
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UniProt Group	P0CX31
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Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S27-A	OB [auth Db]	82	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P35997 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P35997 Go to UniProtKB: P35997
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UniProt Group	P35997
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Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S28-A	PB [auth Dc]	67	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for Q3E7X9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q3E7X9 Go to UniProtKB: Q3E7X9
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UniProt Group	Q3E7X9
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Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
Exosome complex component RRP45	UB [auth EB]	305	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for Q05636 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q05636 Go to UniProtKB: Q05636
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UniProt Group	Q05636
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Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
Exosome complex component SKI6	VB [auth EC]	246	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P46948 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P46948 Go to UniProtKB: P46948
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UniProt Group	P46948
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Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
Exosome complex component RRP43	WB [auth ED]	394	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P25359 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P25359 Go to UniProtKB: P25359
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UniProt Group	P25359
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Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
Exosome complex component RRP46	XB [auth EE]	223	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P53256 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53256 Go to UniProtKB: P53256
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UniProt Group	P53256
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Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
Exosome complex component RRP42	YB [auth EF]	267	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: RRP42, YDL111C
UniProt
Find proteins for Q12277 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12277 Go to UniProtKB: Q12277
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UniProt Group	Q12277
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Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
Exosome complex component MTR3	ZB [auth EG]	250	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P48240 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P48240 Go to UniProtKB: P48240
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UniProt Group	P48240
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Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
Exosome complex component RRP40	AC [auth EH]	240	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for Q08285 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q08285 Go to UniProtKB: Q08285
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UniProt Group	Q08285
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Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
Exosome complex component RRP4	BC [auth EI]	359	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P38792 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38792 Go to UniProtKB: P38792
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UniProt Group	P38792
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Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details	Image
Exosome complex component CSL4	CC [auth EJ]	292	Saccharomyces cerevisiae S288C	Mutation(s): 0
UniProt
Find proteins for P53859 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53859 Go to UniProtKB: P53859
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UniProt Group	P53859
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Entity ID: 78
Molecule	Chains	Sequence Length	Organism	Details	Image
Exosome complex exonuclease DIS3	DC [auth EK]	1,001	Saccharomyces cerevisiae S288C	Mutation(s): 0 EC: 3.1.13 (PDB Primary Data), 3.1.26 (PDB Primary Data)
UniProt
Find proteins for Q08162 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q08162 Go to UniProtKB: Q08162
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UniProt Group	Q08162
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Entity ID: 79
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP-dependent RNA helicase DOB1	EC [auth EN]	1,073	Saccharomyces cerevisiae S288C	Mutation(s): 0 EC: 3.6.4.13
UniProt
Find proteins for P47047 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P47047 Go to UniProtKB: P47047
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UniProt Group	P47047
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Entity ID: 65
Molecule	Chains	Length	Organism	Image
5'ETS RNA	QB [auth D2]	700	Saccharomyces cerevisiae S288C
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Entity ID: 66
Molecule	Chains	Length	Organism	Image
18S rRNA	RB [auth D3]	1,808	Saccharomyces cerevisiae S288C
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Entity ID: 67
Molecule	Chains	Length	Organism	Image
U3 snoRNA	SB [auth D4]	333	Saccharomyces cerevisiae S288C
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Entity ID: 68
Molecule	Chains	Length	Organism	Image
RNA	TB [auth EA]	22	Saccharomyces cerevisiae S288C
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Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GTP Query on GTP Download Ideal Coordinates CCD File SDF format, chain HC [auth CL] MOL2 format, chain HC [auth CL]	HC [auth CL]	GUANOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₄ P₃ XKMLYUALXHKNFT-UUOKFMHZSA-N		Interactions Focus chain HC [auth CL] Interactions & Density Focus chain HC [auth CL]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain FC [auth UX] SDF format, chain JC [auth Db] SDF format, chain LC [auth EK] MOL2 format, chain FC [auth UX] MOL2 format, chain JC [auth Db] MOL2 format, chain LC [auth EK]	FC [auth UX], JC [auth Db], LC [auth EK]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain FC [auth UX] Focus chain JC [auth Db] Focus chain LC [auth EK] Interactions & Density Focus chain FC [auth UX] Focus chain JC [auth Db] Focus chain LC [auth EK]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain IC [auth CL] SDF format, chain GC [auth UX] SDF format, chain KC [auth EK] MOL2 format, chain IC [auth CL] MOL2 format, chain GC [auth UX] MOL2 format, chain KC [auth EK]	GC [auth UX], IC [auth CL], KC [auth EK]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain GC [auth UX] Focus chain IC [auth CL] Focus chain KC [auth EK] Interactions & Density Focus chain GC [auth UX] Focus chain IC [auth CL] Focus chain KC [auth EK]