7ZE0

Solution structure of the PulM C-terminal domain from Klebsiella oxytoca


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 15 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure and dynamic association of an assembly platform subcomplex of the bacterial type II secretion system.

Dazzoni, R.Li, Y.Lopez-Castilla, A.Brier, S.Mechaly, A.Cordier, F.Haouz, A.Nilges, M.Francetic, O.Bardiaux, B.Izadi-Pruneyre, N.

(2023) Structure 31: 152

  • DOI: https://doi.org/10.1016/j.str.2022.12.003
  • Primary Citation of Related Structures:  
    7ZE0, 8A9W, 8A9X, 8AB1

  • PubMed Abstract: 

    Type II secretion systems (T2SSs) allow diderm bacteria to secrete hydrolytic enzymes, adhesins, or toxins important for growth and virulence. To promote secretion of folded proteins, T2SSs assemble periplasmic filaments called pseudopili or endopili at an inner membrane subcomplex, the assembly platform (AP). Here, we combined biophysical approaches, nuclear magnetic resonance (NMR) and X-ray crystallography, to study the Klebsiella AP components PulL and PulM. We determined the structure and associations of their periplasmic domains and describe the structure of the heterodimer formed by their ferredoxin-like domains. We show how structural complementarity and plasticity favor their association during the secretion process. Cysteine scanning and crosslinking data provided additional constraints to build a structural model of the PulL-PulM assembly in the cellular context. Our structural and functional insights, together with the relative cellular abundance of its components, support the role of AP as a dynamic hub that orchestrates pilus polymerization.


  • Organizational Affiliation

    Institut Pasteur, Université Paris Cité, CNRS UMR3528, Structural Bioinformatics Unit, 75015 Paris, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Type II secretion system protein M
A, B
83Klebsiella oxytocaMutation(s): 0 
Gene Names: DVB85_16620
UniProt
Find proteins for P15752 (Klebsiella pneumoniae)
Explore P15752 
Go to UniProtKB:  P15752
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15752
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 15 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-14-CE09-0004

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-18
    Type: Initial release
  • Version 1.1: 2023-02-15
    Changes: Database references