7ZAO

Structure of BPP43_05035 of Brachyspira pilosicoli

PDB DOI: https://doi.org/10.2210/pdb7ZAO/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Brachyspira pilosicoli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-03-22 Released: 2023-10-11
Deposition Author(s): Rajan, A., Gallego, P., Pelaseyed, T.
Funding Organization(s): Wenner-Gren Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.223
R-Value Work: 0.183
R-Value Observed: 0.185

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

BPP43_05035 is a Brachyspira pilosicoli cell surface adhesin that weakens the integrity of the epithelial barrier during infection

Rajan, A., Gallego, P., Dolan, B., Patel, P., Dwibedi, C., Luis, A.S., Trillo-Muyo, S., Arike, L., van der Post, S., Simren, M., Pelaseyed, T.

(2024) Biorxiv

DOI: https://doi.org/10.1101/2024.04.06.584567

Macromolecule Content

Total Structure Weight: 98.62 kDa
Atom Count: 6,734
Modelled Residue Count: 858
Deposited Residue Count: 924
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sialidase (Neuraminidase) family protein-like protein	A, B	462	Brachyspira pilosicoli	Mutation(s): 0 Gene Names: BPP43_05035
UniProt
Find proteins for A0A3B6VYW6 (Brachyspira pilosicoli P43/6/78) Explore A0A3B6VYW6 Go to UniProtKB: A0A3B6VYW6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A3B6VYW6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth A] SDF format, chain E [auth B] SDF format, chain F [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain E [auth B] MOL2 format, chain F [auth B]	C [auth A], D [auth A], E [auth B], F [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.223
R-Value Work: 0.183
R-Value Observed: 0.185
Space Group: P 2₁ 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.907	α = 90
b = 101.358	β = 90
c = 154.974	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-10-11

Deposition Author(s):

Funding Organization	Location	Grant Number
Wenner-Gren Foundation	United States	--

Revision History (Full details and data files)

Version 1.0: 2023-10-11
Type: Initial release
Version 1.1: 2024-04-24
Changes: Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.