7YI6

Deposited: 2022-07-15 Released: 2023-08-30
Deposition Author(s): Yan, L., Yang, G.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Yan, L., Yang, G.

To be published.

Macromolecule Content

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Spike glycoprotein	A, D [auth C]	7	Human coronavirus 229E	Mutation(s): 0 Gene Names: S, 2
UniProt
Find proteins for P15423 (Human coronavirus 229E) Explore P15423 Go to UniProtKB: P15423
Entity Groups
UniProt Group	P15423
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
light chain of 3D1	B, E	214	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
heavy chain of 3D1	C [auth D], F	221	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain L [auth E] MOL2 format, chain L [auth E]	L [auth E]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain L [auth E] Interactions & Density Focus chain L [auth E]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain G [auth B] SDF format, chain H [auth B] SDF format, chain J [auth D] SDF format, chain K [auth D] SDF format, chain M [auth E] MOL2 format, chain G [auth B] MOL2 format, chain H [auth B] MOL2 format, chain J [auth D] MOL2 format, chain K [auth D] MOL2 format, chain M [auth E]	G [auth B], H [auth B], J [auth D], K [auth D], M [auth E]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain G [auth B] Focus chain H [auth B] Focus chain J [auth D] Focus chain K [auth D] Focus chain M [auth E] Interactions & Density Focus chain G [auth B] Focus chain H [auth B] Focus chain J [auth D] Focus chain K [auth D] Focus chain M [auth E]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain I [auth B] MOL2 format, chain I [auth B]	I [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain I [auth B] Interactions & Density Focus chain I [auth B]