7XW1

The crystal structure of AhpD from Pseudomonas aeruginosa

• PDB DOI: https://doi.org/10.2210/pdb7XW1/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Pseudomonas aeruginosa
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-05-25 Released: 2022-06-29 
• Deposition Author(s): Xu, B.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.36 Å
• R-Value Free: 0.313 
• R-Value Work: 0.249 
• R-Value Observed: 0.255 

Literature

The crystal structure of AhpD from Pseudomonas aeruginosa

Xu, B.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 16.25 kDa 
• Atom Count: 999 
• Modelled Residue Count: 133 
• Deposited Residue Count: 145 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Carboxymuconolactone decarboxylase family protein	A	145	Pseudomonas aeruginosa	Mutation(s): 0
UniProt
Find proteins for A0A2U2XNT2 (Pseudomonas aeruginosa) Explore A0A2U2XNT2  Go to UniProtKB:  A0A2U2XNT2

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.36 Å
• R-Value Free: 0.313 
• R-Value Work: 0.249 
• R-Value Observed: 0.255 
• Space Group: P 6₃ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.976	α = 90
b = 92.976	β = 90
c = 65.957	γ = 120

Software Package:

Software Name	Purpose
Aimless	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-06-29 
Deposition Author(s): Xu, B.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2022-06-29
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description