7X4S

Crystal structure of Rhodostomin ARGDMP mutant

PDB DOI: https://doi.org/10.2210/pdb7X4S/pdb

Classification: BLOOD CLOTTING
Organism(s): Calloselasma rhodostoma
Expression System: Pichia
Mutation(s): Yes

Deposited: 2022-03-03 Released: 2023-03-08
Deposition Author(s): Chang, Y.T., Chuang, W.J.
Funding Organization(s): Ministry of Science and Technology (MoST, Taiwan)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.303
R-Value Work: 0.223
R-Value Observed: 0.227

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Rhodostomin ARGDMP mutant

Chang, Y.T., Chuang, W.J.

To be published.

Macromolecule Content

Total Structure Weight: 14.63 kDa
Atom Count: 1,068
Modelled Residue Count: 131
Deposited Residue Count: 136
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Disintegrin rhodostomin	A, B	68	Calloselasma rhodostoma	Mutation(s): 1
UniProt
Find proteins for P30403 (Calloselasma rhodostoma) Explore P30403 Go to UniProtKB: P30403
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P30403
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.303
R-Value Work: 0.223
R-Value Observed: 0.227
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.499	α = 90
b = 61.334	β = 105.3
c = 34.644	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
HKL-3000	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-03-08

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, Taiwan)	Taiwan	--

Revision History (Full details and data files)

Version 1.0: 2023-03-08
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.