7V4T

Cryo-EM structure of Alphavirus M1

  • Classification: VIRUS
  • Organism(s): Alphavirus M1
  • Mutation(s): No 

  • Deposited: 2021-08-15 Released: 2022-08-17 
  • Deposition Author(s): Gao, Y., Jia, X., Zhang, Q.
  • Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.04 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Cryo-EM evidence of viral N-glycosylation reveal receptor binding mechanisms of alphavirus M1

Song, D., Jia, X.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
E1 glycoproteinA,
D [auth E],
G [auth I],
J [auth M]		438Alphavirus M1Mutation(s): 0 
UniProt
Find proteins for Q5Y388 (Getah virus)
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Go to UniProtKB:  Q5Y388
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5Y388
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
E2 glycoproteinB,
E [auth F],
H [auth J],
K [auth N]		422Alphavirus M1Mutation(s): 0 
UniProt
Find proteins for Q5Y388 (Getah virus)
Explore Q5Y388 
Go to UniProtKB:  Q5Y388
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UniProt GroupQ5Y388
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid proteinC,
F [auth G],
I [auth K],
L [auth O]		267Alphavirus M1Mutation(s): 0 
UniProt
Find proteins for Q5Y388 (Getah virus)
Explore Q5Y388 
Go to UniProtKB:  Q5Y388
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5Y388
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG (Subject of Investigation/LOI)
Query on NAG
Download Ideal Coordinates CCD File 
M [auth A]
N [auth B]
O [auth B]
P [auth E]
Q [auth F]
M [auth A],
N [auth B],
O [auth B],
P [auth E],
Q [auth F],
R [auth F],
S [auth I],
T [auth J],
U [auth J],
V [auth M],
W [auth N],
X [auth N]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.04 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONjspr

Structure Validation

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View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China81973342
National Natural Science Foundation of China (NSFC)China81773751
National Natural Science Foundation of China (NSFC)China81772675
National Natural Science Foundation of China (NSFC)China81903652
National Natural Science Foundation of China (NSFC)China81802536

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-17
    Type: Initial release