7UTR

CPV Affinity Purified Polyclonal Fab B Site Fab


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo EM structures map a post vaccination polyclonal antibody response to canine parvovirus.

Hartmann, S.R.Charnesky, A.J.Fruh, S.P.Lopez-Astacio, R.A.Weichert, W.S.DiNunno, N.Cho, S.H.Bator, C.M.Parrish, C.R.Hafenstein, S.L.

(2023) Commun Biol 6: 955-955

  • DOI: https://doi.org/10.1038/s42003-023-05319-7
  • Primary Citation of Related Structures:  
    7UTP, 7UTR, 7UTS, 7UTU, 7UTV

  • PubMed Abstract: 

    Canine parvovirus (CPV) is an important pathogen that emerged by cross-species transmission to cause severe disease in dogs. To understand the host immune response to vaccination, sera from dogs immunized with parvovirus are obtained, the polyclonal antibodies are purified and used to solve the high resolution cryo EM structures of the polyclonal Fab-virus complexes. We use a custom software, Icosahedral Subparticle Extraction and Correlated Classification (ISECC) to perform subparticle analysis and reconstruct polyclonal Fab-virus complexes from two different dogs eight and twelve weeks post vaccination. In the resulting polyclonal Fab-virus complexes there are a total of five distinct Fabs identified. In both cases, any of the five antibodies identified would interfere with receptor binding. This polyclonal mapping approach identifies a specific, limited immune response to the live vaccine virus and allows us to investigate the binding of multiple different antibodies or ligands to virus capsids.


  • Organizational Affiliation

    Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP1548Canine parvovirus strain BMutation(s): 0 
UniProt
Find proteins for Q11213 (Canine parvovirus type 2 (isolate Dog/United States/CPV-b/1978))
Explore Q11213 
Go to UniProtKB:  Q11213
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ11213
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Light chain antibody fragmentH [auth L]95Canis lupus familiarisMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Heavy chain antibody fragmentI [auth H]107Canis lupus familiarisMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/Office of the DirectorUnited StatesS10OD026822-01
National Institutes of Health/Office of the DirectorUnited StatesR01AI092571

Revision History  (Full details and data files)

  • Version 1.0: 2023-10-04
    Type: Initial release