7U2T

Influenza Neuraminidase N1-MI15-sNAp-174


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure-based design of stabilized recombinant influenza neuraminidase tetramers.

Ellis, D.Lederhofer, J.Acton, O.J.Tsybovsky, Y.Kephart, S.Yap, C.Gillespie, R.A.Creanga, A.Olshefsky, A.Stephens, T.Pettie, D.Murphy, M.Sydeman, C.Ahlrichs, M.Chan, S.Borst, A.J.Park, Y.J.Lee, K.K.Graham, B.S.Veesler, D.King, N.P.Kanekiyo, M.

(2022) Nat Commun 13: 1825-1825

  • DOI: https://doi.org/10.1038/s41467-022-29416-z
  • Primary Citation of Related Structures:  
    7U2Q, 7U2T

  • PubMed Abstract: 

    Influenza virus neuraminidase (NA) is a major antiviral drug target and has recently reemerged as a key target of antibody-mediated protective immunity. Here we show that recombinant NAs across non-bat subtypes adopt various tetrameric conformations, including an "open" state that may help explain poorly understood variations in NA stability across viral strains and subtypes. We use homology-directed protein design to uncover the structural principles underlying these distinct tetrameric conformations and stabilize multiple recombinant NAs in the "closed" state, yielding two near-atomic resolution structures of NA by cryo-EM. In addition to enhancing thermal stability, conformational stabilization improves affinity to protective antibodies elicited by viral infection, including antibodies targeting a quaternary epitope and the broadly conserved catalytic site. Stabilized NAs can also be integrated into viruses without affecting fitness. Our findings provide a deeper understanding of NA structure, stability, and antigenicity, and establish design strategies for reinforcing the conformational integrity of recombinant NA proteins.


  • Organizational Affiliation

    Institute for Protein Design, University of Washington, Seattle, WA, 98195, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Influenza N1-MI15-sNAp-174
A, B, C, D
387Influenza A virusMutation(s): 0 
UniProt
Find proteins for C7FH46 (Influenza A virus)
Explore C7FH46 
Go to UniProtKB:  C7FH46
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupC7FH46
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-20
    Type: Initial release