7U0V

Structure of myxoma virus M062 protein variant Lau

• PDB DOI: https://doi.org/10.2210/pdb7U0V/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Myxoma virus (strain Lausanne)
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2022-02-19 Released: 2023-02-22 
• Deposition Author(s): O'Byrne, P., Khan, A.R.
• Funding Organization(s): Science Foundation Ireland

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.45 Å
• R-Value Free: 0.266 
• R-Value Work: 0.211 
• R-Value Observed: 0.217 

Literature

Structure of myxoma virus M062 protein variant MAV

O'Byrne, P., Khan, A.R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: light scattering

Macromolecule Content

• Total Structure Weight: 18.71 kDa 
• Atom Count: 1,271 
• Modelled Residue Count: 156 
• Deposited Residue Count: 161 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable host range protein 2-1	A	161	Myxoma virus (strain Lausanne)	Mutation(s): 3  Gene Names: m062R
UniProt
Find proteins for P68550 (Myxoma virus (strain Lausanne)) Explore P68550  Go to UniProtKB:  P68550

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NI	B [auth A]	NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.45 Å
• R-Value Free: 0.266 
• R-Value Work: 0.211 
• R-Value Observed: 0.217 
• Space Group: P 6₄

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 94.827	α = 90
b = 94.827	β = 90
c = 44.136	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-02-22 
Deposition Author(s): O'Byrne, P., Khan, A.R.

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Funding Organization	Location	Grant Number
Science Foundation Ireland	Ireland	SFI 12/1A/1239

Revision History  

• Version 1.0: 2023-02-22
  Type: Initial release
  
• Version 1.1: 2023-08-30
  Changes: Data collection, Source and taxonomy, Structure summary
• Version 1.2: 2023-10-25
  Changes: Refinement description